AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind9g03674 ATGTCAGTTAGTGTAATTAGTTCTCCATTGATCACTGTTTGGTTAATTGCGGCAGGGTTGTTGGGGTTCTTTTTTGTCAAGTCGTGGACTAGTGTTGTGGAGAGGTTTGGTGTTGTTGTTAAGCCGTTTACGAGACAGGAGAATACTGTTATTCAGACTTGTGTTGTTGCTTGTTATGGCCTTGCTTTTAGTGGTGGATTTGGGTCATATTTGCTTTCGATGGATGAGAGAACATACAATTTGATTGGTGCGGACTACCCGGGTAACCGGGCTGAGGATGTTAAGAACCCGGGGCTATTGTGGATGATGGGTTTCATTTTTGTCGTCAGTTTTCTTGGCCTTTTTAGTCTTGTTCCACTTCGCAAGGTCATGGTAATGGATTATAAGCTTACATACCCTAGTGGAACTGCCACTGCAATGTTGATCAATAGTTTTCACACTACCACTGGTGCAGAGCTTGCAAGGAAACAAGTAAACTGTCTTGGAAAGTATTTGAGCATAAGTTTTGTCTGGAGTTGCTTTAAGTGGTTTTTCAGTGGTGTTGGGGATGCTTGTGGTTTTGACAATTTTCCGAGTTTTGGCTTGATGTTGTACAACAACACATTTTACTTTGACTTCAGTCCAACTTATGTCGGATGTGGTCTTATCTGCCCTCACATAGTCAACTGTTCGGTTCTTTTTGGAGCTATTGTATCATGGGGTTTTCTTTGGCCATTGATTACTACATATGCAGGAGATTGGTATCCAGCTGATCTTGGCAGCAATGACTTCAAAGGTCTCTATGGCTATAAGGTCTTTATATCCATTGCCCTTATTCTTGGAGATGGTCTTTACAATCTGGTTAAGATAATATTCATTTCCCTTAAGGCGTTGTTGAACAGCCGCACTAAACAACAAAATCTCCCTGTAACACACGAGATTCTAGATGCGGAGACAACTAAACTACAACTCGAAGAAAAAAAACGAGACACCGTTTTCTTAAAAGACAATATACCAACATGGGTTGCAGCATCCGCATACATAGCCTTAGTTGGAATATCCATGGCTACAATGCCACTCATATTCCCACCACTAAAATGGTACCTCGTCCTATGCTCCTACATTATCGCACCTGCATTAGCTTTCTGCAACTCATATGGAACTGGTCTCACTGATTGGAGTCTAGCTTCAACATATGGCAAAATCGGTCTATTCATCATAGCATCATTAGTCGGAAGCGATGGTGGGGTCATAGCTGGTTTAGCTGCATGTGGGGTCATGATGTCAATTGTTTCAACTGCTGCTGATCTAATGCAAGATTTCAAAACTGGCTACCTTACATTATCGTCAGCAAAATCCATGTTTGTGAGTCAGTTAGTCGGAACAGCTATGGGATGCATCATTGCGCCACTCACGTTTTGGATGTTTTGGAGCGCGTTCGAAATCGGGACTCCCGATAGTCCTTACAAGGCACCGTACGCTGTCATATACCGTGAAATGGCTATCCTTGGTGTAGAGGGGTTCTCTGAGCTCCCCAAACATTGTTTGGCTTTATGCTGTGGGTTCTTTGTGGCAGCACTGGTCCTAAATCTTTTGCGAGATTTTACTCCCAAAAAGGTGTCTCAATTCATACCTATTCCAATGGCAATGGCAGTTCCATTCTATATCGGGGCGTATTTTGCGATTGATATGTTTATTGGGACAGTGATACTCTTTGTGTGGGAGCGAGTGAACAAGAAAGATGCGGAAGATTATGCAGGAGCAGTTGCTTCAGGCTTAATATGTGGGGACGGGATATGGACCATCCCATCGGCTATACTCTCGATTCTAAGGGTTGATCCACCAATCTGCATGTACTTCGGACCGTCTGTGAGTTCCTGA 1860 43.12 MSVSVISSPLITVWLIAAGLLGFFFVKSWTSVVERFGVVVKPFTRQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMMGFIFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTTGAELARKQVNCLGKYLSISFVWSCFKWFFSGVGDACGFDNFPSFGLMLYNNTFYFDFSPTYVGCGLICPHIVNCSVLFGAIVSWGFLWPLITTYAGDWYPADLGSNDFKGLYGYKVFISIALILGDGLYNLVKIIFISLKALLNSRTKQQNLPVTHEILDAETTKLQLEEKKRDTVFLKDNIPTWVAASAYIALVGISMATMPLIFPPLKWYLVLCSYIIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASLVGSDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCIIAPLTFWMFWSAFEIGTPDSPYKAPYAVIYREMAILGVEGFSELPKHCLALCCGFFVAALVLNLLRDFTPKKVSQFIPIPMAMAVPFYIGAYFAIDMFIGTVILFVWERVNKKDAEDYAGAVASGLICGDGIWTIPSAILSILRVDPPICMYFGPSVSS 619
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind9g03674 619 Pfam OPT oligopeptide transporter protein 7 600 IPR004813 GO:0035673(InterPro)
Cind9g03674 619 NCBIfam OPT family oligopeptide transporter 8 597 IPR004813 GO:0035673(InterPro)
Cind9g03674 619 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 15 615 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind9g03674 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
68197 Cind4g02578 Cind9g03674
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr7:115675163 Cind9g03674 Cind-Chr9:152754406 dispersed
Cind Cind-Chr9:152754406 Cind9g04027 Cind-Chr9:63469918 dispersed
Cind Cind-Chr4:166167517 Cind9g03674 Cind-Chr9:152754406 wgd