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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind9g04298 ATGGAAAACGACTTCGATCGACTTCTCTTCTTCGAACACGCCCGCCGTACTGCCGAACTCACTTACACCAAAAACCCACTCGACACCGAGGTACCTGCGATCTCGAAATTGGATGAAGCGTTAAAGATTGATCCGAGGAAACATGATACGTTGTGGTGTATGGGAAATGCGCAAACTTCTTATGCTTTTTTGACTCGTGAGGAGGACGAAGCTAAGGGTTATTTTGATTCGGCGTATGTTTACTTTCAGCAGGCTGTTGAAGAGGATCCGGGGAACACACTTTACCGCAAGTCATTGGAAGTGGCTGTGAAGGCTCCTGAATTACATGCTGAGCTCCATAAACAGGGATCTATTCAACAAGCTATGGGACCAGTGGCAGGAGGTGGTCCTTCGACCTCTTCTAGTATCAAGGGTCCGAAGACACAAAAAAACAGCGATCTGACATATGACATACTTGGGTGGGCTATTCTTGCTGTTACTATTGTGGCATGGGTTGGATTCGCCAAAGCAAATGTACCTCCACCACCTTCTCGATAA 537 46.93 MENDFDRLLFFEHARRTAELTYTKNPLDTEVPAISKLDEALKIDPRKHDTLWCMGNAQTSYAFLTREEDEAKGYFDSAYVYFQQAVEEDPGNTLYRKSLEVAVKAPELHAELHKQGSIQQAMGPVAGGGPSTSSSIKGPKTQKNSDLTYDILGWAILAVTIVAWVGFAKANVPPPPSR 178
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind9g04298 178 MobiDBLite consensus disorder prediction 120 142 - -
Cind9g04298 178 Pfam Plant specific mitochondrial import receptor subunit TOM20 33 169 - -
Cind9g04298 178 Pfam Plant specific mitochondrial import receptor subunit TOM20 5 30 - -
Cind9g04298 178 Gene3D Tetratricopeptide repeat domain 32 122 IPR011990 GO:0005515(InterPro)
Cind9g04298 178 Gene3D Tetratricopeptide repeat domain 1 31 IPR011990 GO:0005515(InterPro)
Cind9g04298 178 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 2 30 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Cind9g04298 178 SUPERFAMILY TPR-like 33 102 IPR011990 GO:0005515(InterPro)
Cind9g04298 178 MobiDBLite consensus disorder prediction 126 142 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind9g04298 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
68412 Cind7g02340 Cind9g04298
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr7:82085147 Cind9g04298 Cind-Chr9:150550863 wgd
Cind Cind-Chr9:150550863 Cind9g03498 Cind-Chr9:220428392 wgd