AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind9g04299 ATGCCATCATTAATCCTAGAAGAACCACTTTTAACGCCAACCCAAGACAGATTCTGCATGTTCCCAATTCACTACCCTCAAATATGGGAAATGTACAAAAAAGCCCAAGCTTCATTCTGGACAGCAGAAGAAGTGGACTTATCAGCAGATATCCGTCACTGGGAGTCGTTAACTAACGGAGAACGTCATTTCATTACACACGTTCTCGCGTTTTTCGCGTCTTCTGATGGCATTGTGTTGGAGAATTTGGCTAGTAGGTTTATGAATGATGTCCAAGTAGCCGAAGCGAGGGCTTTTTACGGGTTTCAAATTGCGATAGAGAATATACATTCAGAGATGTATAGTTTGCTTTTGGAAACGTATGTTAAGGATGGGAAGGAGAAAGATAGGTTGTTTCGGGCAGTTGAGACAATTCCGTGTGTTGAGAAAAAGGCGAAGTGGGCGATGAAGTGGATTGATGGCTCGGAGTCGTTTGCTGAAAGGATTATTGCGTTTGCGTGTGTTGAAGGTATATTCTTTTCAGGAAGCTTTTGCGCGATATTTTGGTTAAAAAAGCGTGGCTTAATGTCAGGACTAACCTTCTCAAACGAGTTAATCTCACGAGACGAAGGCCTCCACTGCGATTTCGCATGCCTGCTCTACACTTTGCTAAACAACAAACTAACCGAAGAACGCGTAAAGTCCATAGTATCTGACGCAGTTGATATCGAACGTGAATTTGTATGTGACGCATTACCATGTGCACTAGTTGGCATGAATGGTGAACTCATGAGTACATATATCGAGTTTGTGGCTGATAGGTTGTTGGTGTCCTTAGGATTTAGCAAAATGTACAATGTTTCGAACCCGTTTGATTGGATGGAATTGATTTCGTTACAAGGGAAGACGAATTTTTTCGAGAAGCGAGTAGGGGAGTATCAAAAGGCTTCGATTATGTCGAATTTGAATGCAAATGGTGGTGATCAACATGTGTTCAAGATGGATGAAGATTTTTAA 996 41.77 MPSLILEEPLLTPTQDRFCMFPIHYPQIWEMYKKAQASFWTAEEVDLSADIRHWESLTNGERHFITHVLAFFASSDGIVLENLASRFMNDVQVAEARAFYGFQIAIENIHSEMYSLLLETYVKDGKEKDRLFRAVETIPCVEKKAKWAMKWIDGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMSGLTFSNELISRDEGLHCDFACLLYTLLNNKLTEERVKSIVSDAVDIEREFVCDALPCALVGMNGELMSTYIEFVADRLLVSLGFSKMYNVSNPFDWMELISLQGKTNFFEKRVGEYQKASIMSNLNANGGDQHVFKMDEDF 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind9g04299 331 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 8 331 IPR000358 GO:0009263(InterPro)
Cind9g04299 331 PIRSF NrdB 7 317 IPR000358 GO:0009263(InterPro)
Cind9g04299 331 CDD RNRR2 18 292 IPR033909 GO:0009263(InterPro)
Cind9g04299 331 Gene3D Ribonucleotide Reductase, subunit A 3 308 IPR012348 GO:0016491(InterPro)
Cind9g04299 331 SUPERFAMILY Ferritin-like 5 308 IPR009078 -
Cind9g04299 331 Pfam Ribonucleotide reductase, small chain 17 283 IPR000358 GO:0009263(InterPro)
Cind9g04299 331 ProSitePatterns Ribonucleotide reductase small subunit signature. 106 122 IPR030475 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind9g04299 K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
Cind9g04299 K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr8:281235199 Cind9g04299 Cind-Chr9:150557894 dispersed
Cind Cind-Chr8:281031429 Cind9g04299 Cind-Chr9:150557894 dispersed
Cind Cind-Chr7:82161353 Cind9g04299 Cind-Chr9:150557894 wgd