AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind9g04302 | ATGGTCAAGGCAAAAGACTTGTTGATAACATTTATAAACAACAGATGGCTAGTGTTCATAGCAGCAATGTGGATACAATCATGTGCAGGAATAGGTTACTTGTTTGGAAGTATATCACCAGTTATAAAGTCATCATTAAACTATAACCAGAAACAAGTAGCAAGGTTAGGTGTTGCTAAGGATCTTGGTGACAGTGTTGGTTTTTTGGCTGGGAGTATGTCTGAGATACTACCCTTGTGGGCCCTACTGCTTGTTGGTGCTATTCAGAATTTTGTTGGCTATGGTTGGGTTTGGCTTGTTGTTACTGGTAAAGCTCCTATGTTGCCATTGTGGGTGATGTGCCTTCTCATATTCATTGGAACGAATGGCGAAACCTACTTCAACACAGCAGCATTAGTTTCATGTGTTCAAAACTTCCCCAAAAGCCGTGGGCCAGTGGTCGGAATATTAAAAGGATTCGCAGGGCTCAGTGGTGCAATATTAACCCAAATATACGCATTAATAAACTCACCCGATAAAGCCTCAATTATTTTCATGGTTGCTGTCGGGCCTTCAATGGTAGTAATTGCACTCATGTTCATTGTTAGACCGGTTGGTGGTCACAGACAACTTAGAGCATCAGATGCATCGAATTTCTCAGTAATATACTGCGTGTGTCTCATTTTAGCCTCTTATTTAATGGGAGTTATGCTTGTTGAAGATTTAGTTGATTTAAAACAAACAATAGTCAAAATTTTTACCGCCATATTATTTGTGCTCTTAGTGTGTCCAATTGGGATTCCTATATACTTGACTTTTTCTTCTGACCGGAGAACCCCTGAACAAGAAGCTCTTTTATCTGAACCACAACATAAAGAACCTGAAACATCACATGACCCAAATGAAATTATATTTAGTGAAGTTGAAGAGGAGAAGCCTCATGATGTAGACTTACTTCCAGCATCAGAAAGGCAAAAGAGAATAGCACAGTTACAATCGAAGTTGGCGCAAGCAGCTGCAGAAGGAGCGGTGAGGATTAAGAGGACAAGGGGCCCACATAGAGGCGAAGACTTTGACCTTACACAGGCTTTGATTAAAGCTGATTTTTGGTTACTTTTTTGCACCCTTTTGTTAGGGTCGGGTTCAGGTTTGACTGTGATCGACAATTTGGGGCAGATGAGTGAGTCTTTAGGGTATGATAATACTCATATTTTTGTTTCAATGATCAGCATTTGGAACTTCTTGGGTCGTGTTGGTGGTGGCTATGTCTCAGAGATCGTCGTCAGGGATTACGCATACCCAAGGCCAGTAGCTCTGGCTGTTGCACAGGCCATAATGGCTATCGGGCATTTGTTCTTTGCTATGGGTTGGCCTGGTGCAATGTACATTGGTACCCTTTTGATCGGGCTAGGCTACGGGTTCCACTGGGCTATCATACCAGCTACTGCCTCCGAATTATTTGGAGTCAAAAAGTTTGGAGCTTTATATAATTTCCTCACCCTGGCAAATCCTGCTGGTTCACTAGTCTTTAATGGTCTCATTGCTAGTCACATATACGACTCCGAAGCAGAAAAACAAGCCGGACTACACACAAGTTCAGCTTCTTATCTGACAAAGCTTTTTGACACGGATGATGCCCTTAAGTGCTCGGGTTCCATATGCTTCTTTCTCACTTACATGATAATGTCAGGACTCTGTATCATTGCATGTATCCTGAGTTTGATTCTCGTACGCCGAACTAAGACTGTCTACCAGAACCTCTACGGTAAAAGAACATAA | 1758 | 41.98 | MVKAKDLLITFINNRWLVFIAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSMSEILPLWALLLVGAIQNFVGYGWVWLVVTGKAPMLPLWVMCLLIFIGTNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYALINSPDKASIIFMVAVGPSMVVIALMFIVRPVGGHRQLRASDASNFSVIYCVCLILASYLMGVMLVEDLVDLKQTIVKIFTAILFVLLVCPIGIPIYLTFSSDRRTPEQEALLSEPQHKEPETSHDPNEIIFSEVEEEKPHDVDLLPASERQKRIAQLQSKLAQAAAEGAVRIKRTRGPHRGEDFDLTQALIKADFWLLFCTLLLGSGSGLTVIDNLGQMSESLGYDNTHIFVSMISIWNFLGRVGGGYVSEIVVRDYAYPRPVALAVAQAIMAIGHLFFAMGWPGAMYIGTLLIGLGYGFHWAIIPATASELFGVKKFGALYNFLTLANPAGSLVFNGLIASHIYDSEAEKQAGLHTSSASYLTKLFDTDDALKCSGSICFFLTYMIMSGLCIIACILSLILVRRTKTVYQNLYGKRT | 585 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind9g04302 | 585 | CDD | MFS-Mch1p-like | 15 | 563 | - | - | |
| Cind9g04302 | 585 | Pfam | Nodulin-like | 15 | 262 | IPR010658 | - | |
| Cind9g04302 | 585 | Coils | Coil | 314 | 334 | - | - | |
| Cind9g04302 | 585 | SUPERFAMILY | MFS general substrate transporter | 14 | 575 | IPR036259 | - | |
| Cind9g04302 | 585 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 14 | 578 | - | GO:0016020(PANTHER) | |
| Cind9g04302 | 585 | FunFam | Nodulin family protein | 353 | 579 | - | - | |
| Cind9g04302 | 585 | Gene3D | MFS general substrate transporter like domains | 302 | 532 | IPR036259 | - | |
| Cind9g04302 | 585 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | - | - | |
| Cind9g04302 | 585 | MobiDBLite | consensus disorder prediction | 275 | 294 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind9g04302 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr1:54125294 | Cind9g04302 | Cind-Chr9:150584399 | dispersed | |
| Cind | Cind-Chr2:235184604 | Cind9g04302 | Cind-Chr9:150584399 | dispersed | |
| Cind | Cind-Chr5:249702867 | Cind9g04302 | Cind-Chr9:150584399 | dispersed | |
| Cind | Cind-Chr7:87681235 | Cind9g04302 | Cind-Chr9:150584399 | dispersed | |
| Cind | Cind-Chr8:128560270 | Cind9g04302 | Cind-Chr9:150584399 | dispersed | |
| Cind | Cind-Chr9:111561429 | Cind9g04302 | Cind-Chr9:150584399 | dispersed | |
| Cind | Cind-Chr9:150584399 | Cind4g03615 | Cind-Chr4:305379112 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g00120 | . | 174 | 413 | Nodulin-like gene family | AT4G19450 | 46.311 | 2.62e-57 | 192.0 | |
| Cind1g00623 | . | 1 | 414 | Nodulin-like gene family | AT4G19180 | 54.695 | 1.26e-147 | 435.0 | |
| Cind1g00624 | . | 473 | 740 | Nodulin-like gene family | AT4G19180 | 58.672 | 1.28e-87 | 273.0 | |
| Cind1g00802 | . | 146 | 212 | Nodulin-like gene family | AT2G39510 | 52.941 | 6.61e-18 | 76.6 | |
| Cind1g01096 | ACH | 4 | 200 | Nodulin-like gene family | AT2G39510 | 57.921 | 4.39e-78 | 238.0 | |
| Cind1g01098 | . | 7 | 342 | Nodulin-like gene family | AT2G39510 | 55.193 | 1.22e-140 | 403.0 | |
| Cind1g01101 | . | 1 | 374 | Nodulin-like gene family | AT2G39510 | 55.703 | 3.97e-146 | 417.0 | |
| Cind1g01297 | . | 7 | 374 | Nodulin-like gene family | AT2G39510 | 54.054 | 1.65e-136 | 392.0 | |
| Cind1g01300 | . | 118 | 209 | Nodulin-like gene family | AT2G37450 | 34.783 | 2.26e-16 | 70.1 | |
| Cind1g01858 | ACH | 47 | 546 | Nodulin-like gene family | AT5G14120 | 60.079 | 0.0 | 598.0 | |
| Cind1g01907 | . | 83 | 307 | Nodulin-like gene family | AT3G30340 | 39.111 | 1.21e-50 | 165.0 | |
| Cind1g02896 | . | 13 | 364 | Nodulin-like gene family | AT4G08290 | 37.006 | 6.82e-79 | 245.0 | |
| Cind1g02897 | . | 13 | 364 | Nodulin-like gene family | AT4G08290 | 36.158 | 1.75e-75 | 236.0 | |
| Cind1g03232 | . | 16 | 349 | Nodulin-like gene family | AT5G45370 | 62.011 | 2.54e-157 | 451.0 | |
| Cind1g03535 | . | 1 | 341 | Nodulin-like gene family | AT1G25270 | 39.589 | 8.67e-91 | 276.0 | |
| Cind1g03802 | . | 4 | 198 | Nodulin-like gene family | AT3G43660 | 60.386 | 5.65e-86 | 251.0 | |
| Cind1g03815 | . | 1 | 341 | Nodulin-like gene family | AT1G25270 | 40.469 | 2.68e-94 | 285.0 | |
| Cind1g03817 | . | 1 | 343 | Nodulin-like gene family | AT1G25270 | 35.632 | 2.21e-73 | 231.0 | |
| Cind1g03819 | . | 1 | 349 | Nodulin-like gene family | AT1G68170 | 36.901 | 1.96e-64 | 207.0 | |
| Cind1g06864 | . | 9 | 413 | Nodulin-like gene family | AT4G19450 | 58.765 | 4.68e-155 | 447.0 | |
| Cind2g00227 | . | 15 | 389 | Nodulin-like gene family | AT1G75500 | 73.6 | 0.0 | 561.0 | |
| Cind2g00946 | . | 1 | 538 | Nodulin-like gene family | AT2G39210 | 68.148 | 0.0 | 750.0 | |
| Cind2g01202 | . | 89 | 346 | Nodulin-like gene family | AT3G28050 | 40.154 | 7.60e-57 | 185.0 | |
| Cind2g01203 | . | 8 | 367 | Nodulin-like gene family | AT3G28050 | 36.944 | 1.19e-68 | 218.0 | |
| Cind2g01204 | . | 1 | 347 | Nodulin-like gene family | AT1G70260 | 45.845 | 1.63e-108 | 320.0 | |
| Cind2g01279 | . | 1 | 356 | Nodulin-like gene family | AT3G18200 | 66.852 | 5.81e-174 | 486.0 | |
| Cind2g01903 | . | 8 | 355 | Nodulin-like gene family | AT5G64700 | 38.292 | 2.63e-80 | 248.0 | |
| Cind2g03861 | ACH | 1 | 386 | Nodulin-like gene family | AT2G39210 | 65.206 | 0.0 | 519.0 | |
| Cind2g05021 | . | 16 | 562 | Nodulin-like gene family | AT4G34950 | 69.424 | 0.0 | 783.0 | |
| Cind2g05119 | . | 4 | 356 | Nodulin-like gene family | AT1G09380 | 51.275 | 3.20e-130 | 375.0 | |
| Cind2g05998 | . | 307 | 337 | Nodulin-like gene family | AT5G40230 | 70.968 | 9.43e-11 | 54.3 | |
| Cind2g06250 | . | 183 | 310 | Nodulin-like gene family | AT2G37460 | 48.438 | 4.45e-41 | 140.0 | |
| Cind3g01692 | . | 224 | 352 | Nodulin-like gene family | AT5G40240 | 43.411 | 1.40e-30 | 115.0 | |
| Cind3g01876 | ACH | 10 | 198 | Nodulin-like gene family | AT3G43660 | 64.356 | 8.56e-90 | 260.0 | |
| Cind3g01877 | ACH | 1 | 198 | Nodulin-like gene family | AT3G43660 | 67.136 | 1.74e-98 | 282.0 | |
| Cind3g01881 | ACH | 1 | 198 | Nodulin-like gene family | AT3G43660 | 64.953 | 8.77e-96 | 276.0 | |
| Cind3g01884 | ACH | 2 | 195 | Nodulin-like gene family | AT3G43660 | 55.779 | 1.17e-77 | 229.0 | |
| Cind3g04428 | . | 48 | 564 | Nodulin-like gene family | AT4G19450 | 46.78 | 1.97e-139 | 412.0 | |
| Cind3g04630 | . | 92 | 137 | Nodulin-like gene family | AT5G45370 | 67.391 | 1.62e-15 | 70.1 | |
| Cind4g00841 | . | 160 | 575 | Nodulin-like gene family | AT4G19180 | 37.327 | 2.15e-93 | 297.0 | |
| Cind4g01843 | . | 16 | 219 | Nodulin-like gene family | AT5G40240 | 34.375 | 6.19e-30 | 114.0 | |
| Cind4g02374 | ACH | 5 | 350 | Nodulin-like gene family | AT1G74780 | 47.688 | 8.21e-87 | 268.0 | |
| Cind4g02375 | . | 436 | 522 | Nodulin-like gene family | AT1G74780 | 59.77 | 6.61e-33 | 117.0 | |
| Cind4g02376 | . | 5 | 530 | Nodulin-like gene family | AT1G74780 | 58.824 | 0.0 | 589.0 | |
| Cind4g02378 | . | 5 | 530 | Nodulin-like gene family | AT1G74780 | 57.656 | 0.0 | 577.0 | |
| Cind4g02379 | . | 5 | 522 | Nodulin-like gene family | AT2G34350 | 50.864 | 9.93e-167 | 478.0 | |
| Cind4g03337 | . | 1 | 740 | Nodulin-like gene family | AT4G19180 | 59.014 | 0.0 | 854.0 | |
| Cind4g03357 | . | 15 | 263 | Nodulin-like gene family | AT1G75500 | 74.297 | 1.14e-133 | 404.0 | |
| Cind4g03615 | ACH | 7 | 506 | Nodulin-like gene family | AT5G14120 | 62.351 | 0.0 | 629.0 | |
| Cind4g05187 | . | 5 | 561 | Nodulin-like gene family | AT1G80530 | 59.643 | 0.0 | 673.0 | |
| Cind4g05188 | . | 5 | 561 | Nodulin-like gene family | AT1G80530 | 59.002 | 0.0 | 674.0 | |
| Cind5g00542 | . | 304 | 564 | Nodulin-like gene family | AT2G28120 | 67.557 | 2.53e-131 | 382.0 | |
| Cind5g02627 | . | 153 | 378 | Nodulin-like gene family | AT2G37460 | 59.052 | 5.31e-90 | 268.0 | |
| Cind5g03357 | . | 17 | 184 | Nodulin-like gene family | AT4G30420 | 38.333 | 8.89e-26 | 100.0 | |
| Cind5g04514 | . | 10 | 564 | Nodulin-like gene family | AT2G39210 | 66.427 | 0.0 | 759.0 | |
| Cind5g04878 | . | 272 | 569 | Nodulin-like gene family | AT1G31470 | 48.867 | 2.94e-84 | 264.0 | |
| Cind5g05211 | . | 120 | 214 | Nodulin-like gene family | AT2G39510 | 52.083 | 4.17e-27 | 100.0 | |
| Cind5g05212 | . | 262 | 305 | Nodulin-like gene family | AT2G39510 | 59.091 | 2.66e-11 | 59.3 | |
| Cind6g00878 | . | 17 | 364 | Nodulin-like gene family | AT5G40230 | 47.059 | 7.14e-105 | 311.0 | |
| Cind6g02813 | . | 58 | 125 | Nodulin-like gene family | AT5G50630 | 52.941 | 2.09e-19 | 84.0 | |
| Cind6g02930 | . | 6 | 356 | Nodulin-like gene family | AT5G40240 | 44.444 | 5.76e-98 | 293.0 | |
| Cind6g03197 | . | 3 | 368 | Nodulin-like gene family | AT1G21890 | 57.143 | 2.02e-152 | 433.0 | |
| Cind6g03355 | . | 1 | 120 | Nodulin-like gene family | AT3G43660 | 26.667 | 8.99e-07 | 46.2 | |
| Cind6g03434 | . | 111 | 523 | Nodulin-like gene family | AT1G80530 | 50.721 | 3.29e-133 | 399.0 | |
| Cind6g03669 | . | 5 | 198 | Nodulin-like gene family | AT3G43660 | 66.162 | 5.59e-92 | 266.0 | |
| Cind7g01672 | . | 271 | 556 | Nodulin-like gene family | AT2G28120 | 69.655 | 1.22e-132 | 400.0 | |
| Cind7g03679 | . | 190 | 315 | Nodulin-like gene family | AT2G37460 | 52.381 | 3.05e-44 | 146.0 | |
| Cind7g04825 | ACH | 7 | 204 | Nodulin-like gene family | AT2G39510 | 48.0 | 4.28e-56 | 180.0 | |
| Cind8g00293 | . | 9 | 198 | Nodulin-like gene family | AT3G43660 | 68.421 | 3.77e-93 | 269.0 | |
| Cind8g00299 | ACH | 3 | 198 | Nodulin-like gene family | AT3G43660 | 69.388 | 1.07e-95 | 275.0 | |
| Cind8g00300 | . | 2 | 198 | Nodulin-like gene family | AT3G43660 | 68.528 | 1.99e-93 | 269.0 | |
| Cind8g00301 | ACH | 17 | 193 | Nodulin-like gene family | AT3G43660 | 70.621 | 6.33e-88 | 257.0 | |
| Cind8g00302 | . | 94 | 185 | Nodulin-like gene family | AT3G43660 | 65.217 | 1.08e-36 | 120.0 | |
| Cind8g00303 | ACH | 17 | 83 | Nodulin-like gene family | AT3G43660 | 86.567 | 5.56e-36 | 122.0 | |
| Cind8g00306 | ACH | 4 | 198 | Nodulin-like gene family | AT3G43660 | 64.467 | 1.51e-90 | 262.0 | |
| Cind8g00307 | ACH | 2 | 198 | Nodulin-like gene family | AT3G43660 | 70.558 | 6.30e-99 | 283.0 | |
| Cind8g01606 | . | 4 | 143 | Nodulin-like gene family | AT1G09380 | 56.338 | 1.11e-49 | 162.0 | |
| Cind8g01607 | . | 5 | 359 | Nodulin-like gene family | AT1G09380 | 49.859 | 8.03e-117 | 341.0 | |
| Cind8g02263 | . | 34 | 530 | Nodulin-like gene family | AT1G74780 | 51.479 | 4.94e-162 | 473.0 | |
| Cind8g02975 | . | 229 | 547 | Nodulin-like gene family | AT2G28120 | 66.873 | 3.55e-147 | 424.0 | |
| Cind8g03237 | . | 3 | 390 | Nodulin-like gene family | AT5G07050 | 65.664 | 6.41e-178 | 499.0 | |
| Cind8g03687 | . | 6 | 450 | Nodulin-like gene family | AT2G30300 | 49.263 | 5.91e-138 | 405.0 | |
| Cind9g00028 | . | 4 | 529 | Nodulin-like gene family | AT1G74780 | 56.464 | 0.0 | 562.0 | |
| Cind9g01005 | . | 40 | 355 | Nodulin-like gene family | AT5G40230 | 39.241 | 5.89e-67 | 226.0 | |
| Cind9g01007 | . | 25 | 366 | Nodulin-like gene family | AT5G40230 | 41.595 | 5.14e-82 | 252.0 | |
| Cind9g01469 | . | 16 | 329 | Nodulin-like gene family | AT5G45370 | 67.16 | 2.90e-166 | 467.0 | |
| Cind9g02143 | . | 121 | 159 | Nodulin-like gene family | AT2G39510 | 66.667 | 5.92e-12 | 58.9 | |
| Cind9g02284 | . | 9 | 336 | Nodulin-like gene family | AT3G30340 | 50.0 | 3.34e-118 | 345.0 | |
| Cind9g03553 | . | 1 | 342 | Nodulin-like gene family | AT5G40240 | 40.87 | 2.43e-78 | 243.0 | |
| Cind9g03554 | . | 6 | 133 | Nodulin-like gene family | AT5G40240 | 42.308 | 1.30e-23 | 92.8 | |
| Cind9g03555 | . | 11 | 358 | Nodulin-like gene family | AT5G40240 | 41.944 | 6.52e-90 | 273.0 | |
| Cind9g03556 | . | 63 | 218 | Nodulin-like gene family | AT3G28050 | 39.506 | 4.19e-32 | 116.0 | |
| Cind9g03557 | . | 248 | 363 | Nodulin-like gene family | AT3G28050 | 48.333 | 3.86e-29 | 105.0 | |
| Cind9g03559 | . | 133 | 340 | Nodulin-like gene family | AT5G40240 | 41.346 | 3.66e-51 | 169.0 | |
| Cind9g03560 | . | 14 | 355 | Nodulin-like gene family | AT5G40240 | 41.261 | 1.74e-84 | 258.0 | |
| Cind9g03563 | . | 3 | 365 | Nodulin-like gene family | AT3G28050 | 60.27 | 1.15e-141 | 406.0 | |
| Cind9g03564 | . | 3 | 365 | Nodulin-like gene family | AT3G28050 | 63.587 | 1.13e-158 | 448.0 | |
| Cind9g03565 | . | 125 | 332 | Nodulin-like gene family | AT3G28050 | 56.604 | 4.63e-80 | 243.0 | |
| Cind9g04039 | . | 14 | 191 | Nodulin-like gene family | AT3G43660 | 43.636 | 5.15e-53 | 169.0 | |
| Cind9g04302 | . | 6 | 576 | Nodulin-like gene family | AT5G14120 | 71.993 | 0.0 | 848.0 |