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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi12g00194 ATGTCTCTTTTGGAATCAAACAAGAATAGAGGTGAGGTCAGAATTCATGAGAGTTTGGAAGAACTCAGCACAGATTTGGCTGATTACATAGCCGAATTATCAGAAGCATCCGTTAAAGAACGTGGGTTTTTCGCTATCGCGTTATCCGGTGGTTCTGTAATTACCTTGTTGAGGAATCTTTGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCCAAATGGTATATATTTTGGGCAGATGAACGTGTGGTTGCCAAGAATCATGTTGATAGCAACTACAAACTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCGAGTCATGTACATTCCATCAACGACTCTCTCACCGCAGAAGAAGCCGCTAACGAATATGAGTTTATGATCCGGCAGCTAGTTAGGACCCGTGTGGTCAACGTGTCTGATGTCAGCGACTGCCCGAAGTTTGACCTAGTCCTTCTAGGCATGGGACCAGATGGCCATGTGGCATCTTTGATGCCAGACCATCCGGTCCTTGAAGAAAAAAACGAATGGGTGACATTCATCACCACTTCCCCTAAACCACCGCCCGAAAGAATCACCTTCACCCTACCTGTCATCAACTCTGCCGCCAATGTGGCGGTGGTGGTGACAGGTGGCGAGAAAGCGGAAGCTGTCCGCTTGGCTATAGATGATGTGGGGGCCGGACCGATAGTGCCAGCTAGGATGGTTGAACCAATTGTAGGGAAGTTGGTGTGGTTTTTGGACAATGAGGCTGCTTCAAAGCTTAAGGGCTTTGAACAATTTTCTTAA 798 46.24 MSLLESNKNRGEVRIHESLEELSTDLADYIAELSEASVKERGFFAIALSGGSVITLLRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFMIRQLVRTRVVNVSDVSDCPKFDLVLLGMGPDGHVASLMPDHPVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGEKAEAVRLAIDDVGAGPIVPARMVEPIVGKLVWFLDNEAASKLKGFEQFS 265
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi12g00194 265 CDD 6PGL 20 250 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Cobi12g00194 265 Gene3D - 8 261 - -
Cobi12g00194 265 NCBIfam 6-phosphogluconolactonase 15 258 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Cobi12g00194 265 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 259 IPR037171 -
Cobi12g00194 265 FunFam Probable 6-phosphogluconolactonase 8 259 - -
Cobi12g00194 265 Coils Coil 19 39 - -
Cobi12g00194 265 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 248 IPR006148 GO:0005975(InterPro)
Cobi12g00194 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 258 IPR039104 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi12g00194 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
69799 Cobi12g00194 Cobi5g02834
376382 Cobi12g00194 Cobi2g00609
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1787429 Cobi Cobi12g00194 Cobi-Chr12:1903542 Cobi2g01496 Cobi-Chr2:28247496
1844913 Cobi Cobi12g00194 Cobi-Chr12:1903542 Cobi2g00609 Cobi-Chr2:7635962
1845738 Cobi Cobi12g00194 Cobi-Chr12:1903542 Cobi5g02834 Cobi-Chr5:78964510