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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g00604 ATGAACAGATTGAGAACGAGTTGTTCAAGTTTAATCGAACAGATGCCGACTTTAACGAAGCTGTACTCGATGAAAGAAGCTTCCGAGCACAATTCCGCCGGAGATTGCTGGATTGTTGTCGACGGCAAGGTCTATGACGTGTCTTCATATCTGGATGAACACCCTGGTGGCGATGATGTCATCCTTCAGGCTACAGGGAAAGACGCGACAGATGAATTTGAAGACGCGGGCCATAGCAAAACTGCTAGGGAACTTATGGAGACTTTCTTCGTAGGCGAGCTTGACCCGTCAGACATCCCTCAACTTGAAGTTGTTTCAGAGAAACAAAAAGGGTACATCCCTGAGAAATTGGTTGACCTGAGTAAACAATACTGGGCGGCTCCAGTGGCGGTTGTTGGCATATCGGTGGTCGTCACCTTCTTGTACTTGCGCAACAAGTAG 441 47.85 MNRLRTSCSSLIEQMPTLTKLYSMKEASEHNSAGDCWIVVDGKVYDVSSYLDEHPGGDDVILQATGKDATDEFEDAGHSKTARELMETFFVGELDPSDIPQLEVVSEKQKGYIPEKLVDLSKQYWAAPVAVVGISVVVTFLYLRNK 146
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g00604 146 Pfam Cytochrome b5-like Heme-Steroid binding domain 24 95 IPR001199 -
Cobi2g00604 146 PRINTS Cytochrome B5 signature 82 94 IPR001199 -
Cobi2g00604 146 PRINTS Cytochrome B5 signature 44 54 IPR001199 -
Cobi2g00604 146 PRINTS Cytochrome B5 signature 54 68 IPR001199 -
Cobi2g00604 146 PRINTS Cytochrome B5 signature 69 76 IPR001199 -
Cobi2g00604 146 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 19 95 IPR001199 -
Cobi2g00604 146 FunFam Cytochrome b5 type B 17 99 - -
Cobi2g00604 146 PANTHER CYTOCHROME B5 13 141 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cobi2g00604 146 SMART Cyt-b5-2 22 95 IPR001199 -
Cobi2g00604 146 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 50 57 IPR018506 GO:0020037(InterPro)
Cobi2g00604 146 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 16 102 IPR036400 -
Cobi2g00604 146 Gene3D - 14 100 IPR036400 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g00604 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1793889 Cobi Cobi2g00604 Cobi-Chr2:7613661 Cobi2g01495 Cobi-Chr2:28191705
1819703 Cobi Cobi2g00604 Cobi-Chr2:7613661 Cobi4g00873 Cobi-Chr4:7843140
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi1g02831 . 1 130 NADPH P450 reductases gene family AT5G53560 50.769 1.57e-42 135.0
Cobi1g02832 ACH 1 126 NADPH P450 reductases gene family AT5G53560 53.543 3.95e-44 139.0
Cobi1g03596 WGDA 38 273 NADPH P450 reductases gene family AT5G17770 39.922 1.73e-50 177.0
Cobi2g03077 . 6 79 NADPH P450 reductases gene family AT5G48810 66.216 7.44e-35 113.0
Cobi2g02544 . 1 127 NADPH P450 reductases gene family AT5G53560 53.906 1.48e-46 145.0
Cobi2g01495 ACH 1 133 NADPH P450 reductases gene family AT5G53560 73.684 1.01e-72 211.0
Cobi11g00007 ACH 6 132 NADPH P450 reductases gene family AT5G53560 58.915 1.61e-49 155.0
Cobi9g00278 WGDA 31 281 NADPH P450 reductases gene family AT5G17770 74.104 3.86e-139 391.0
Cobi6g01339 . 31 281 NADPH P450 reductases gene family AT5G17770 78.088 2.72e-147 412.0
Cobi10g00468 . 1 134 NADPH P450 reductases gene family AT5G53560 62.5 1.15e-57 174.0
Cobi4g00873 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 74.419 3.50e-72 210.0
Cobi4g01000 ACH,WGDA 30 281 NADPH P450 reductases gene family AT5G17770 80.952 1.75e-159 443.0
Cobi10g01186 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 74.419 4.65e-72 210.0
Cobi6g00041 ACH,WGDA 31 281 NADPH P450 reductases gene family AT5G17770 77.689 1.69e-146 410.0
Cobi2g00604 . 1 134 NADPH P450 reductases gene family AT1G26340 62.687 1.63e-60 181.0
Cobi3g03547 . 39 281 NADPH P450 reductases gene family AT5G17770 41.379 3.37e-64 202.0
Cobi3g02900 . 7 133 NADPH P450 reductases gene family AT5G53560 49.606 1.03e-41 132.0
Cobi7g03156 . 37 134 NADPH P450 reductases gene family AT5G48810 57.143 1.27e-27 101.0
Cobi10g01107 ACH,WGDA 30 281 NADPH P450 reductases gene family AT5G17770 81.746 3.56e-160 444.0
Cobi9g01390 . 3 59 NADPH P450 reductases gene family AT5G53560 40.351 2.71e-12 60.5
Cobi9g01391 . 5 85 NADPH P450 reductases gene family AT1G26340 37.037 1.32e-12 60.8
Cobi4g01651 . 1 120 NADPH P450 reductases gene family AT1G60660 61.667 7.07e-48 147.0
Cobi6g02675 WGDA 31 273 NADPH P450 reductases gene family AT5G17770 37.736 7.35e-50 176.0
Cobi8g00008 . 1 134 NADPH P450 reductases gene family AT5G48810 53.731 8.66e-49 153.0