AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02194 ATGGGCAATTACAAGTTCAAATTCTCTTGGTTTCACTCTTCCAATAAAACCCAACACCTCACAACTTCCTCCTCTTCCTCTTCTTCATCCTCCTCCTTTCAATTATCTCAACCTTCACCTGACCAAAGAAAATCATATTACTTCACTAGAGAACTAACACAACCTCTACCCGACCCGACCCGTATTCCAGACCCGCCAAGAAAATCCACCAAGAAAAAAAAACCAACTTCCCCAGCTCGCCGGAAATTAAAGTCACCGGAGACATTGAAAAACAATACGTTACACGACAACGTTTATAGGAAAGCTGAACTCCCTCGGATAATAACAAAACCCACGAAGGAAAACGAATTCGGGTCGGAAAAATGGGTTATTGATGGAGCAAGTCGGAGTTTATCGGTTCGGGTTGTGAAGGAGGGTATTATCGGAAGCCCGGTGAGAAAATCGAAAGGGAACGTTTACTCGCCGAGGTTAGGGAACCGGGTTCGGGTTAACGGGTTAAGCGGCGGACGGAGGAGAAGTGGGACCCGGCGGAGCTTGTCGGAAAGTTTGGCGGTTGTGAAGACATCGGTGGATCCTGGGAGGGATTTTAAGGAATCAATGGTTGAGATGATAATGGAGAATAATATGAAGAGTTCTAAAGATTTGGAAGATCTTCTTGCATGTTATCTTGCATTGAATTCAGATGAGTATCATGACTTGATCATCAAGGTATTCAAACAAATTTGGTTTGAGAGTACTGATATTAGACTGTAG 753 43.82 MGNYKFKFSWFHSSNKTQHLTTSSSSSSSSSSFQLSQPSPDQRKSYYFTRELTQPLPDPTRIPDPPRKSTKKKKPTSPARRKLKSPETLKNNTLHDNVYRKAELPRIITKPTKENEFGSEKWVIDGASRSLSVRVVKEGIIGSPVRKSKGNVYSPRLGNRVRVNGLSGGRRRSGTRRSLSESLAVVKTSVDPGRDFKESMVEMIMENNMKSSKDLEDLLACYLALNSDEYHDLIIKVFKQIWFESTDIRL 250
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02194 250 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 24 244 IPR038933 GO:0045892(InterPro)
Cobi2g02194 250 Pfam Transcriptional repressor, ovate 189 244 IPR006458 -
Cobi2g02194 250 MobiDBLite consensus disorder prediction 16 49 - -
Cobi2g02194 250 NCBIfam uncharacterized plant-specific domain TIGR01568 184 243 IPR006458 -
Cobi2g02194 250 ProSiteProfiles OVATE domain profile. 185 244 IPR006458 -
Cobi2g02194 250 MobiDBLite consensus disorder prediction 16 94 - -
Cobi2g02194 250 MobiDBLite consensus disorder prediction 80 94 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02194 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1791033 Cobi Cobi1g01905 Cobi-Chr1:68903461 Cobi2g02194 Cobi-Chr2:67652664
1795151 Cobi Cobi2g02194 Cobi-Chr2:67652664 Cobi4g00531 Cobi-Chr4:4855116
1819981 Cobi Cobi2g02194 Cobi-Chr2:67652664 Cobi7g00910 Cobi-Chr7:7305750
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi Ovate 3e-24 No_clan TF OFP