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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02278 ATGTCTCTTCCACTAACCCTAATAATCTCCATCGTTGTCCTATTATCATCTTCATCTCTTCCGGTCATCTCCTCACTAACCGCATACGAAGCACTAGAATCATACGGTTTCCCCGCGGGCCTGCTTCCCTTAGGAGTGACCGGCTACACCCTGGATGAAGAAACCGGCAAGTTCGAGGCGTACCTGCCGGAGACCTGCTCGTACACCGTTCAAGGGTACAATCTCAAATACAAGTCCACAATATCGGGAGTAATTAGTGAAGATAAGCTGACGAACTTGAAGGGTGTAAGTGTAAAAGTGTTGTTATTTTGGTTGGATATTGTTGAAGTGAGTCGTGATGGAGATGAGTTGTATTTGTCGGTTGGGATATTGTCTGCGGGGTTTGATATTAGTGGGTTTGTGGAGTCGCCGCAGTGTGGGTGTGGGTTTGATTGCAATAGCTTGGAGATTAAGGAAGATGATGATGATCACAAGTACAACAATATCATGGGGTTGAAGGTTGCTTTGTGA 510 45.69 MSLPLTLIISIVVLLSSSSLPVISSLTAYEALESYGFPAGLLPLGVTGYTLDEETGKFEAYLPETCSYTVQGYNLKYKSTISGVISEDKLTNLKGVSVKVLLFWLDIVEVSRDGDELYLSVGILSAGFDISGFVESPQCGCGFDCNSLEIKEDDDDHKYNNIMGLKVAL 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02278 169 PANTHER T31J12.3 PROTEIN-RELATED 21 140 IPR007493 -
Cobi2g02278 169 SUPERFAMILY At5g01610-like 7 145 IPR036758 -
Cobi2g02278 169 Pfam Protein of unknown function, DUF538 28 133 IPR007493 -
Cobi2g02278 169 Gene3D - 17 136 IPR036758 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02278 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
69727 Cobi11g02741 Cobi2g02278
70588 Cobi1g03278 Cobi2g02278
71412 Cobi2g02278 Cobi4g00675
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1792068 Cobi Cobi1g03279 Cobi-Chr1:82190484 Cobi2g02278 Cobi-Chr2:69686327
1795214 Cobi Cobi2g02278 Cobi-Chr2:69686327 Cobi4g00676 Cobi-Chr4:6105008
1828561 Cobi Cobi1g03278 Cobi-Chr1:82187494 Cobi2g02278 Cobi-Chr2:69686327
1839354 Cobi Cobi11g02741 Cobi-Chr11:71005801 Cobi2g02278 Cobi-Chr2:69686327
1847760 Cobi Cobi2g02278 Cobi-Chr2:69686327 Cobi4g00675 Cobi-Chr4:6103648