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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02286 ATGGCGAATACGGAAGAGAAAGCGGTGATGATAGTGGGGATCGATGACAGCGATCACAGCTTCTACGCACTAGAGTGGACTCTGGATCACTTTCTCGTACCCTCTGCTCCCAATACTCCCTTCAAGCTCGTCATTGTTCACTCCAAACCTTCTCCCACCTCCGCCATCGGTTTCGCCGGTCCTGGTGCTGCCGATGTTTATCCCTTTGTGGATTCGGATTTGAGGAAGATCGCTGCGCGAGTGGTGGAAAGAGCCAAGGACCTTTGTCATTCCAAATCGGTGGATGATGTGAAGGTTGAAGTTGTGGAAGGCGATGCGAGGAATGTCCTATGTGAAGCTGTAGAGAGGCACCATGCTACCATGCTGGTAGTTGGTAGCCATGGTTATGGAGCAATTAAAAGGGCGGTTTTGGGGAGTGTAAGTGACTATGTTACTCATCATGCCCATTGCACCGTCATGATTGTGAAGAAGCCGAAGACCAAACACTCGGGTTAG 495 50.51 MANTEEKAVMIVGIDDSDHSFYALEWTLDHFLVPSAPNTPFKLVIVHSKPSPTSAIGFAGPGAADVYPFVDSDLRKIAARVVERAKDLCHSKSVDDVKVEVVEGDARNVLCEAVERHHATMLVVGSHGYGAIKRAVLGSVSDYVTHHAHCTVMIVKKPKTKHSG 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02286 164 CDD USP-Like 10 155 - -
Cobi2g02286 164 Gene3D HUPs 2 163 IPR014729 -
Cobi2g02286 164 Pfam Universal stress protein family 10 156 IPR006016 -
Cobi2g02286 164 PRINTS Universal stress protein signature 134 156 IPR006015 -
Cobi2g02286 164 PRINTS Universal stress protein signature 7 25 IPR006015 -
Cobi2g02286 164 PRINTS Universal stress protein signature 116 128 IPR006015 -
Cobi2g02286 164 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 160 - -
Cobi2g02286 164 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02286 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
69730 Cobi11g02756 Cobi2g02286
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr11:71110966 Cobi2g02286 Cobi-Chr2:69860682 dispersed
Cobi Cobi-Chr2:69860682 Cobi7g00401 Cobi-Chr7:3291139 dispersed
Cobi Cobi-Chr2:69860682 Cobi6g00545 Cobi-Chr6:4723513 transposed