AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02292 ATGGAGGCCATAACATCTCCGTCGATAAAGGCAATCAGCAAGAGCGCTATCCACAGAATCTGCTCCGGTCAAGTCATTCTGGACCTCCCTTCCGCCGTCAAGGAACTCGTCGAGAACAGCCTGGACGCCGGCGCCACCAGCATCGAAGTTTCCTTGAAAGAATACGGCCAAGAGTCCTTTCAGGTCGTCGATAACGGCTGCGGCATTTCCCCTCACAATTTTAAGGCGTTAGCACTTAAGCATCATACCTCCAAGTTAACGGATTTTCCTGATCTTCAATCGTTGACGACTTTCGGGTTTAGAGGGGAGGCTCTTAGTGCTCTGTGTAATTTAGGGGATTTAACAGTGGAAACACGAACACAACACGAGAAAGTTGCAACGCATTTGACCTTTGACCGATCTGGTTTGCTTACCGATGAGAGAACGACTGCACGCCAGGTTGGCACCACTGTCACTGTGAAGAAGTTGTTCTCCAATTTGCCTGTGAGATGCAAAGAGTTCCATCGCAACATTAGGAAGGAGTATGGAAAGTTGATTTCATTACTCAATGCCTATGCTCTAACAGCCAAAGGGGTTCGATTAGTTTGCAAAAACACAACTGGGAAAAATAAAACCTCTATAGTAATTAAAACACAAGGAACCGGTTCTCTAAAAGATAATATCATTACAGTGTTTGGCATGAGCACTTTTACCTGTTTAGAGCCCATGAATCTATCTATATCAGATACTTGCCAAGTGGATGGTTTTCTTTCTAAACCTGGTAACGGTAGTGGACGAAGTTTAGGCGATCGCCAGTATTATTTTGTTAACGGACGACCTGTTGACATGCCAAAAGTGAGCAAGCTTGTGAATGAATTGTACAAGTCAGCCAACTCAAAACAATATCCTATTGCAATAATGAACTTTGTTGTTCCAACTAGTGTTTGTGATGTTAACGTGACCCCAGATAAACGAAAAGTGTTCTTATCTGATGAAGTGTCGGTTTTAATGTTGTTAAAAGAAGCTTTGTTGAAGATTTATTCACCAAATCTTGCTAGCTTCTCAGTACAGAAAGCTGATGAACAGGACCAGTCTTTTTCACAGTTTTCAAAAACGCAAGTATCGTTAGAGGATACTGATTGTAAAAAGGAAACTAGCAGTGTTGTGATTGAAGATGAAGCTATTAATGTGATTAAGGTTGATGATTATAGTTTACCAAAGAGAGATTTTACACTTCAGTTTCATGGCGTGAAGAAAACCGAATCCATTTATAGTAAGAAAGTTGTAACTGGCAACCCTACTTATAACAGACATTCATCATTATCATACAACTCAAAAACACATAAAAGTGTTGATGAAAGAAAAGATTCACCTCGTTCCGTGGCTCCCATTCAGTCACTGCTTACATCATTTGTTGCTGTAAACAAAAGAAAGCATGAAAGCATTGGTGACACTTTATCTGAGCTCCCGGTTCTTAGAAACGGGCCCACTGTGCGTCAGTCAGTTAATCAAAGTTATAGTTCTAATTCCACATTTGCAAAATCTTTAGTGAAATGCCATGTAGTTGATGACTCTGATGAAGTTGACTTAAATGAGTCAAAGTCAAAGTCTTCAGATAGTACTCTAATGGATGAATGTGATGATGATTTAGAAGTCTCTCCTGTTAAAGTTGTTAAAACTTCTGGACAAGTTGATGAGGACATAATAAGAATTGGGACGCCTGAATCAGTTTCAAAATCAGTATTAAATGCCTCATCTCCTGAAAAAATTAATGATGACATGTCAACTCCAGATTCACCTGTACCTTCTCGTTCAAAGATGTGTTATACAATGCAGTTTAGTTTTGAGGAATTAAAGAAAAAGAGGCAGCAAAAACTAGCGGCATTTCAAGCAAGCAAACATACACATGGAATATCAAAGGCTAAAGGATGCTATGCTGATGCTACATTAGAGATTTCTCAAGTGATAAAGGAGGATGCTAAAGAAAAAGCTTTATCTGCTGCAACAAGTGAATTAGAAAAGTTATTCAAGAAAGAAGATTTTGGCCGCATGAAGGTTATTGGGCAGTTTAATCTTGGATTTATCATTGGCAAGTTGGACCAAGACCTCTTTATAGTAGATCAGCATGCCGCGGATGAAAAATACAATTATGAGCGCTTGTCACAGTCCACCGTCTTGAACCAACAACCGTTGCTGAGGCCAATTTCAGTGGAGTTATCTCCTGAAGAAGAAATAATCGCCTCGATGCACATGGATACTATTAGCAAAAACGGGTTTTCATTAGAAGAAGACATGGATGCTCCTCCTGGTCACCGTTTCAAATTAAAAGCCGTCCCCTTCAGTAAAAACATAACATTTGGTGTTGCAGATGTGAAGGAGCTTATATCTATATTGGCTGATAGTGAAGGAGAATGTTCAATTATGGGCACTTATAAAACAGACACCACGGATTCAGTGTGTCCTCCGAGAGTACGTGCAATGTTAGCTTCACGTGCATGCAGATCATCTGTGATGATTGGTGATCCACTTGGAAGAAAGGAAATGCAAAAGATAGTTGAACATTTGACGGGTTTACGGTCACCATGGAATTGTCCACATGGTAGACCAACAATGCGCCACCTGGTGGATTTAACGACCGTGCATAAAAGGTCACACGAAGATGAATTAGTTTAG 2652 40.27 MEAITSPSIKAISKSAIHRICSGQVILDLPSAVKELVENSLDAGATSIEVSLKEYGQESFQVVDNGCGISPHNFKALALKHHTSKLTDFPDLQSLTTFGFRGEALSALCNLGDLTVETRTQHEKVATHLTFDRSGLLTDERTTARQVGTTVTVKKLFSNLPVRCKEFHRNIRKEYGKLISLLNAYALTAKGVRLVCKNTTGKNKTSIVIKTQGTGSLKDNIITVFGMSTFTCLEPMNLSISDTCQVDGFLSKPGNGSGRSLGDRQYYFVNGRPVDMPKVSKLVNELYKSANSKQYPIAIMNFVVPTSVCDVNVTPDKRKVFLSDEVSVLMLLKEALLKIYSPNLASFSVQKADEQDQSFSQFSKTQVSLEDTDCKKETSSVVIEDEAINVIKVDDYSLPKRDFTLQFHGVKKTESIYSKKVVTGNPTYNRHSSLSYNSKTHKSVDERKDSPRSVAPIQSLLTSFVAVNKRKHESIGDTLSELPVLRNGPTVRQSVNQSYSSNSTFAKSLVKCHVVDDSDEVDLNESKSKSSDSTLMDECDDDLEVSPVKVVKTSGQVDEDIIRIGTPESVSKSVLNASSPEKINDDMSTPDSPVPSRSKMCYTMQFSFEELKKKRQQKLAAFQASKHTHGISKAKGCYADATLEISQVIKEDAKEKALSAATSELEKLFKKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNYERLSQSTVLNQQPLLRPISVELSPEEEIIASMHMDTISKNGFSLEEDMDAPPGHRFKLKAVPFSKNITFGVADVKELISILADSEGECSIMGTYKTDTTDSVCPPRVRAMLASRACRSSVMIGDPLGRKEMQKIVEHLTGLRSPWNCPHGRPTMRHLVDLTTVHKRSHEDELV 883
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02292 883 SUPERFAMILY Ribosomal protein S5 domain 2-like 203 341 IPR020568 -
Cobi2g02292 883 FunFam Mismatch repair endonuclease pms1, putative 719 831 - -
Cobi2g02292 883 Gene3D - 231 344 IPR014721 -
Cobi2g02292 883 Gene3D - 5 225 IPR036890 -
Cobi2g02292 883 SUPERFAMILY DNA mismatch repair protein MutL 675 867 IPR037198 -
Cobi2g02292 883 SMART DNA-mis-repair-2 221 341 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cobi2g02292 883 ProSitePatterns DNA mismatch repair proteins mutL - hexB - PMS1 signature. 99 105 IPR014762 -
Cobi2g02292 883 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 134 - -
Cobi2g02292 883 FunFam Mismatch repair endonuclease pms1, putative 6 225 - -
Cobi2g02292 883 NCBIfam DNA mismatch repair endonuclease MutL 9 396 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cobi2g02292 883 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 23 224 IPR036890 -
Cobi2g02292 883 Pfam MutL C terminal dimerisation domain 680 836 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Cobi2g02292 883 CDD HATPase-MutL-MLH-PMS-like 17 198 - -
Cobi2g02292 883 CDD MutL-Trans-hPMS-2-like 216 341 - -
Cobi2g02292 883 Pfam DNA mismatch repair protein, C-terminal domain 222 339 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cobi2g02292 883 FunFam DNA mismatch repair protein PMS1 227 346 - -
Cobi2g02292 883 Gene3D - 719 831 IPR042121 -
Cobi2g02292 883 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 9 875 IPR038973 GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0032300(PANTHER)|GO:0032300(InterPro)|GO:0032389(PANTHER)|GO:0140664(InterPro)
Cobi2g02292 883 SMART MutL-C-2 679 836 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Cobi2g02292 883 MobiDBLite consensus disorder prediction 428 453 - -
Cobi2g02292 883 Gene3D - 682 867 IPR042120 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02292 K10858 DNA mismatch repair protein PMS2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr1:92723228 Cobi2g02292 Cobi-Chr2:70128606 dispersed