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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02298 ATGGCCATCAAACTATTCGGTGCCCCCGGTTCAACCGCGACTCTCCGAGTGAAGGCATGTCTCGCTGAGAAGAACCTCGACTATGAGTTCGTTAACGTAGACATGAGTAAAAGCGAACACAAGACTCCTGAATTCCTAACCCGTAACCCGTTTGGTCAGGTTCCCGCATTTGAAGACGGAGATCTCAAGCTGTTCGAATCAAGGGCGATTACGCAGTATCTAGCTCACACATACGCGGATAAAGGAACGGATCTGGTAATCAAGGATCCGAAGAAGATGGCGATGGTGGCGGTGTGGATCGAAGTGGAGTCTCAGAAGTTCGATCCGGTAGCATCGAAACTTGCATGGGAGCTAGCTTACAAGCCGATGTTTGGGATGACGACGGACGATGCGGTGGTGGAAGAGAATGAGAAGAAACTGGAGCAAGTGCTTGACGTGTATGAATCGCGGTTGTCTGAAACTAAGTATTTGGGCGGCGATTGCTTCACATTGGCGGATCTCCACCACCTGCCTGTGGTCAAGTATTTGATGGGGACGAAGACTAAGAGGGTGTTTGACGCGCGCCCGCATGTCGGTGCGTGGGTTGCTGATATTCTGTCCCGTCCTGCATGGGTTAAAGCAACCACCGCTTAA 633 51.34 MAIKLFGAPGSTATLRVKACLAEKNLDYEFVNVDMSKSEHKTPEFLTRNPFGQVPAFEDGDLKLFESRAITQYLAHTYADKGTDLVIKDPKKMAMVAVWIEVESQKFDPVASKLAWELAYKPMFGMTTDDAVVEENEKKLEQVLDVYESRLSETKYLGGDCFTLADLHHLPVVKYLMGTKTKRVFDARPHVGAWVADILSRPAWVKATTA 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02298 210 Gene3D - 89 210 - -
Cobi2g02298 210 Pfam Glutathione S-transferase, C-terminal domain 111 202 IPR004046 -
Cobi2g02298 210 SUPERFAMILY Thioredoxin-like 2 82 IPR036249 -
Cobi2g02298 210 Gene3D Glutaredoxin 1 86 - -
Cobi2g02298 210 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cobi2g02298 210 FunFam Glutathione S-transferase F2 87 208 - -
Cobi2g02298 210 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 209 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cobi2g02298 210 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 210 IPR010987 -
Cobi2g02298 210 CDD GST-C-Phi 91 207 IPR034347 -
Cobi2g02298 210 FunFam Glutathione S-transferase F2 2 86 - -
Cobi2g02298 210 SUPERFAMILY GST C-terminal domain-like 84 207 IPR036282 -
Cobi2g02298 210 Pfam Glutathione S-transferase, N-terminal domain 1 75 IPR004045 -
Cobi2g02298 210 SFLD Glutathione Transferase (cytosolic) 1 208 IPR040079 -
Cobi2g02298 210 SFLD Main.5: Phi-like 1 208 - -
Cobi2g02298 210 CDD GST-N-Phi 2 76 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02298 K00799 glutathione S-transferase [EC:2.5.1.18]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71415 Cobi2g02298 Cobi4g00691
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:70307177 Cobi4g00692 Cobi-Chr4:6244099 dispersed
Cobi Cobi-Chr2:70307177 Cobi2g02300 Cobi-Chr2:70373571 proximal
Cobi Cobi-Chr10:60029239 Cobi2g02298 Cobi-Chr2:70307177 transposed
Cobi Cobi-Chr1:80488795 Cobi2g02298 Cobi-Chr2:70307177 transposed
Cobi Cobi-Chr7:20732416 Cobi2g02298 Cobi-Chr2:70307177 transposed
Cobi Cobi-Chr2:70307177 Cobi4g00691 Cobi-Chr4:6237104 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi1g03067 . 3 211 Glutathione S-transferase gene family AT3G03190 48.571 2.29e-69 209.0
Cobi1g04655 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.99e-10 60.8
Cobi1g04945 . 273 429 Glutathione S-transferase gene family AT5G41240 28.025 1.01e-08 55.1
Cobi2g02300 ACH 3 204 Glutathione S-transferase gene family AT1G02920 59.901 4.58e-88 256.0
Cobi2g02298 ACH 3 204 Glutathione S-transferase gene family AT1G02920 63.366 2.29e-94 272.0
Cobi2g02011 . 334 473 Glutathione S-transferase gene family AT5G41240 25.0 1.05e-07 50.4
Cobi2g01585 . 262 398 Glutathione S-transferase gene family AT5G41240 26.761 1.11e-06 48.9
Cobi2g01411 . 273 429 Glutathione S-transferase gene family AT5G41240 28.025 1.41e-08 54.7
Cobi11g01168 . 262 397 Glutathione S-transferase gene family AT5G41240 25.714 6.67e-07 48.9
Cobi11g01864 . 273 477 Glutathione S-transferase gene family AT5G41240 26.941 1.66e-09 56.6
Cobi11g02574 . 3 219 Glutathione S-transferase gene family AT1G17180 62.385 1.79e-103 296.0
Cobi11g02575 . 3 219 Glutathione S-transferase gene family AT1G17180 62.844 4.19e-105 300.0
Cobi11g02576 . 3 219 Glutathione S-transferase gene family AT1G17180 60.092 8.02e-100 287.0
Cobi11g02578 . 3 219 Glutathione S-transferase gene family AT1G17180 61.009 2.71e-102 293.0
Cobi9g00605 . 7 217 Glutathione S-transferase gene family AT3G09270 45.498 7.35e-59 183.0
Cobi9g00604 . 46 207 Glutathione S-transferase gene family AT3G09270 39.506 3.74e-39 131.0
Cobi6g02137 . 2 216 Glutathione S-transferase gene family AT1G78380 62.78 4.55e-107 305.0
Cobi6g01371 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.99e-10 60.8
Cobi4g00691 ACH 3 212 Glutathione S-transferase gene family AT2G02930 54.028 8.60e-78 231.0
Cobi4g00692 ACH 4 211 Glutathione S-transferase gene family AT4G02520 57.212 2.48e-79 236.0
Cobi4g00693 . 54 257 Glutathione S-transferase gene family AT2G47730 54.902 3.04e-79 236.0
Cobi4g00694 . 54 260 Glutathione S-transferase gene family AT2G47730 44.444 6.11e-58 181.0
Cobi4g00695 . 54 262 Glutathione S-transferase gene family AT2G47730 51.429 8.10e-72 217.0
Cobi4g01028 ACH,WGDA 4 220 Glutathione S-transferase gene family AT3G09270 48.214 9.77e-68 206.0
Cobi5g00997 ACH 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.84e-10 60.8
Cobi6g03655 . 2 228 Glutathione S-transferase gene family AT5G41210 59.471 1.94e-101 293.0
Cobi6g03658 . 2 228 Glutathione S-transferase gene family AT5G41210 61.233 7.33e-104 299.0
Cobi6g03659 . 2 230 Glutathione S-transferase gene family AT5G41210 66.376 1.01e-113 324.0
Cobi10g02186 . 1 211 Glutathione S-transferase gene family AT5G17220 54.028 1.06e-85 251.0
Cobi10g01486 . 267 458 Glutathione S-transferase gene family AT5G41240 25.521 3.37e-10 59.7
Cobi10g01382 . 270 485 Glutathione S-transferase gene family AT5G41240 24.891 3.35e-09 56.2
Cobi2g01198 . 273 477 Glutathione S-transferase gene family AT5G41240 26.941 2.13e-09 56.6
Cobi12g02311 . 3 217 Glutathione S-transferase gene family AT1G17180 57.658 1.18e-89 261.0
Cobi12g02310 . 3 217 Glutathione S-transferase gene family AT1G17180 56.306 4.47e-87 255.0
Cobi12g02137 . 333 446 Glutathione S-transferase gene family AT5G41240 29.825 3.60e-11 61.2
Cobi12g01870 . 272 429 Glutathione S-transferase gene family AT5G41240 26.582 1.69e-06 47.4
Cobi12g00553 . 99 212 Glutathione S-transferase gene family AT1G19570 68.966 3.98e-53 177.0
Cobi12g00520 . 266 397 Glutathione S-transferase gene family AT5G41240 29.851 5.87e-08 53.9
Cobi6g00504 . 7 221 Glutathione S-transferase gene family AT2G29420 47.465 4.59e-72 217.0
Cobi6g01013 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.99e-10 60.8
Cobi6g01154 . 2 215 Glutathione S-transferase gene family AT1G78380 61.29 4.42e-93 270.0
Cobi6g01155 . 3 215 Glutathione S-transferase gene family AT1G78380 59.813 7.98e-92 266.0
Cobi6g01156 . 2 215 Glutathione S-transferase gene family AT1G78380 64.815 6.18e-103 295.0
Cobi6g01262 . 4 217 Glutathione S-transferase gene family AT1G10370 43.721 2.78e-59 185.0
Cobi6g01263 . 4 217 Glutathione S-transferase gene family AT1G10370 43.925 2.67e-62 192.0
Cobi6g01264 . 4 164 Glutathione S-transferase gene family AT1G10370 53.333 1.45e-52 165.0
Cobi6g01265 . 4 217 Glutathione S-transferase gene family AT1G10370 47.248 1.88e-64 198.0
Cobi2g00956 . 1 212 Glutathione S-transferase gene family AT1G75270 64.789 7.38e-94 270.0
Cobi3g03384 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 2.01e-10 60.8
Cobi1g01064 . 1 219 Glutathione S-transferase gene family AT2G02390 65.297 7.69e-104 297.0
Cobi9g02678 ACH 17 212 Glutathione S-transferase gene family AT5G02780 71.939 5.95e-100 300.0
Cobi2g03454 . 1 237 Glutathione S-transferase gene family AT5G02780 64.557 1.77e-108 310.0
Cobi2g03455 . 1 187 Glutathione S-transferase gene family AT5G02790 64.706 4.18e-83 244.0
Cobi2g03697 . 267 466 Glutathione S-transferase gene family AT5G41240 25.616 6.92e-10 59.3
Cobi7g03114 . 333 445 Glutathione S-transferase gene family AT5G41240 27.434 2.66e-08 52.4
Cobi7g02364 . 5 222 Glutathione S-transferase gene family AT1G10370 42.466 5.27e-58 182.0
Cobi7g02291 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.99e-10 60.8
Cobi7g02288 . 6 208 Glutathione S-transferase gene family AT2G29490 41.667 6.44e-49 157.0
Cobi7g02287 . 8 209 Glutathione S-transferase gene family AT2G29420 43.35 1.67e-52 167.0
Cobi7g02244 . 1 204 Glutathione S-transferase gene family AT2G30860 68.627 2.73e-107 306.0
Cobi7g02143 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.91e-10 60.8
Cobi7g01426 . 1 266 Glutathione S-transferase gene family AT1G77290 66.292 1.81e-137 386.0
Cobi4g01448 . 262 397 Glutathione S-transferase gene family AT5G41240 25.714 5.02e-06 45.8
Cobi1g02452 . 6 219 Glutathione S-transferase gene family AT2G29490 33.953 2.28e-35 122.0
Cobi1g02072 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.99e-10 60.8
Cobi1g01812 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.92e-10 60.8
Cobi10g00801 ACH 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.87e-10 60.8
Cobi10g01059 . 5 220 Glutathione S-transferase gene family AT3G09270 53.211 7.38e-74 221.0
Cobi10g01060 . 5 220 Glutathione S-transferase gene family AT3G09270 50.459 9.70e-71 213.0
Cobi10g01061 ACH,WGDA 7 110 Glutathione S-transferase gene family AT2G29420 54.808 6.88e-37 122.0
Cobi10g01062 . 7 216 Glutathione S-transferase gene family AT2G29420 45.755 1.21e-65 201.0
Cobi10g01063 . 7 209 Glutathione S-transferase gene family AT2G29420 47.317 3.51e-66 202.0
Cobi10g01064 . 7 220 Glutathione S-transferase gene family AT3G09270 52.778 1.45e-71 215.0
Cobi10g01065 . 5 221 Glutathione S-transferase gene family AT3G09270 49.315 5.30e-69 209.0
Cobi10g01067 . 5 219 Glutathione S-transferase gene family AT3G09270 49.309 2.42e-70 212.0
Cobi5g01895 . 242 455 Glutathione S-transferase gene family AT5G41240 27.65 8.24e-16 75.9
Cobi12g02459 ACH 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.81e-10 60.8
Cobih2tg0362l_1g00008 . 17 215 Glutathione S-transferase gene family AT5G02780 68.342 5.52e-99 285.0
Cobi1g01160 . 270 426 Glutathione S-transferase gene family AT5G41240 27.607 9.26e-10 58.2
Cobih2tg1001l_1g00001 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 2.01e-10 60.8
Cobi9g01956 . 6 211 Glutathione S-transferase gene family AT2G02390 51.942 1.11e-73 221.0
Cobi9g01957 . 5 211 Glutathione S-transferase gene family AT2G02390 53.14 1.17e-72 218.0
Cobi9g02009 . 45 258 Glutathione S-transferase gene family AT5G16710 70.561 1.16e-119 339.0
Cobi9g02026 . 267 466 Glutathione S-transferase gene family AT5G41240 26.108 1.62e-10 61.2
Cobi6g02816 . 273 429 Glutathione S-transferase gene family AT5G41240 28.025 1.09e-08 55.1
Cobi6g02814 . 272 455 Glutathione S-transferase gene family AT5G41240 25.888 2.72e-08 53.1
Cobi8g00941 . 4 216 Glutathione S-transferase gene family AT1G78380 48.611 1.77e-72 218.0
Cobi8g01363 . 262 471 Glutathione S-transferase gene family AT5G41240 28.571 1.93e-13 70.1
Cobi8g01452 . 5 217 Glutathione S-transferase gene family AT1G10370 37.85 7.30e-51 163.0
Cobi8g01454 . 3 217 Glutathione S-transferase gene family AT1G10370 47.005 6.46e-66 201.0
Cobi8g01455 . 263 451 Glutathione S-transferase gene family AT5G41240 23.469 6.08e-09 54.7