AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02330 ATGTCGAAAAACCTGGTGAAATACTCCGTCGTTGACGCCTTTACCGACACGCCGTTCAAAGGAAATCCGGCGGCCGTGTGCTGGCTAGACGGCATACAGAGAGACGATAAGTGGCTGCAGTCAGTTGCTGCTGAATTTAATATCTCTGAGACGTGTTACTTGACTCCGATTCTTAATCATGGTTCAGGAAACCCTAGGTTCAGTCTCAGATGGTTTACTCCTGTAGCTGAGGTGGAGCTTTGTGGTCATGCCACTTTAGCAGCCTCACACTTTCTTTTCCAATCTGGATTGGTGAATTCTAACACAATTGAATTCTCAACCCTATCTGGAATTTTGACTGCCAAAAGAGTTTCAGCTAACAAGATCAATGGTGAATTACAAGACGACTTCTACATAGAATTGGATTTCCCTGTGGTGCCAGTTTCAGATTACAATGATCTCGAGGTTTCTGCAATTTCAGAAATATTAAACGGTGCTTCGGTTGTTGATGTCAAGAAGAACACGCTTGATGATATCTTTGTGGAGCTCTCATCCGCAAAAGAGGTTGAGGAATTCAACCCACAAATTAACAAGATCAAGGAATCCCCGGGTAGAGGGATAGTAATTACAGCACGTGCACCTAACGGCTCGGGGTTTGACTTTTATAGTCGCTTCTTCTGCCCAAAATTAGGAGTTGATGAGGATCCGGTTTGTGGGAGTGCACATTGTGCGTTAGCAGCCTATTGGCATGATAAGTTGGGGAAATGTGATTTTGTGGCATATCAGGCGTCGCCCAGAAGTGGTGTATTACATGTCCATCTTGATAAGGAGAATAAAAGAGTACTTCTTAGAGGCAAAGCCACCACAGTCATGGAAGGATCTCTTTTGGTATAA 873 44.1 MSKNLVKYSVVDAFTDTPFKGNPAAVCWLDGIQRDDKWLQSVAAEFNISETCYLTPILNHGSGNPRFSLRWFTPVAEVELCGHATLAASHFLFQSGLVNSNTIEFSTLSGILTAKRVSANKINGELQDDFYIELDFPVVPVSDYNDLEVSAISEILNGASVVDVKKNTLDDIFVELSSAKEVEEFNPQINKIKESPGRGIVITARAPNGSGFDFYSRFFCPKLGVDEDPVCGSAHCALAAYWHDKLGKCDFVAYQASPRSGVLHVHLDKENKRVLLRGKATTVMEGSLLV 290
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02330 290 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 290 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Cobi2g02330 290 PIRSF Ismrse-PhzF 4 290 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Cobi2g02330 290 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 286 - -
Cobi2g02330 290 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 138 278 - -
Cobi2g02330 290 NCBIfam PhzF family phenazine biosynthesis isomerase 8 288 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Cobi2g02330 290 Pfam Phenazine biosynthesis-like protein 11 286 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Cobi2g02330 290 SUPERFAMILY Diaminopimelate epimerase-like 7 289 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02330 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:71068854 Cobi2g02332 Cobi-Chr2:71090049 proximal