AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02363 ATGCGTTCAATCAAGCTATGGCCACCTAGCCACAGCACACGGCTACTACTCGTCGATCGAATAATAAGAAACCTCACAACACCATCAATATTATCAAGAAAATACGGTCTTTTAAGTAAAGAAGAAGCCGAAGAAGAAGCAAAACTAATCGAATCAGCAGGTTATAATGCAGCTACCCAACACTTTGAAAAAGATCCCGAAAGTGATGGTGGATCTGCTGTTCAAGTTTATGCCAAAGAAGCCAGTAAGTTAATGGTGGAATTTATCAAAACTGGGCCCAAACCGAAAGAACACCGAGAAACTGTACCGGAAATAATCTCATCGGATCATGTTTTCGATATTTCTGGTGGTCGTCGGGCGTTTATCGAGGCGGAAGAAGCCAAGGAGCTGTTAAAACCGTTAAAAGAGCCCGGAAACAAGTTTACAAAAATATGTTTTAGTAACCGAAGCTTTGGGTTACCCGCAGCCCATGTGGCTGCATCGGTTTTGTCGGGTGTTAAAGATCAGTTGACTGAAGTTGACTTATCAGACATTGTGTCAAGGAGGCCCGAGCCCGAAGCGGTTGAGGTTATGAGGATGTTTTCGTCGGCTCTTGCGGGGTGTGGGTTGAGCTATTTGAACTTGTCTAATAATGTGTTGAATGAAAAGGGGATTAGGGCATTGGGGGATCTTTTGAAGTCTCAAAGTAATCTTGTGGAGTTGTATTTGGAGAATGCTGGGATCTCACCGGAAGCAGCAAAGGCGGTTTGCGAGTTGGTTCCCGCGACTGCTAAACTTAAGGTTCTTCATTTTCATCATAATAAAACTGGAGACGAAGGTGCACTCGCAATTTCTCAGCTCGTGAAAGGGTGTCCGAATCTCGAGGATTTCAGGTGTTCCTCCACACGGGTCGGGTCAGTAGGAGGAATAGCTCTGGCAGAAGCTCTTAAGACATGTACAGTTTTGAAGAAACTCGACTTACGTGATAACATGTTCGGACCAAAAGCCGGTGTCACATTGAGTAATAACCTATCCAAGCACACTAATCTAACTGAAATATACCTCAGTTACATGAATCTAGAAAACGAGGGCGTGATTGCATTAGCAAACACACTAAAAACATCGAATTCAACCCTTGAAGTTCTTGAAATGACCAGAAACAACATCACTTTTGAAGGAGCAAACGCTTTGGCAGATTGCATATGCTCAAAGAAACATTCTATAACCAAAATAAAGTTATCTGAGAACGAACTAAAAGATGAAGGCGCTATTGTGATTGCCAAGGCACTCGAAGGCGAGTTTGGACGACTGTTCATAGTTGATTTGAGTGAAAACCAAATCAAAACAGATGGGGCTATGGCATTGGCTAAAGCAGTGGTGGGTAAATTAGGGTTTCGGTTGTTGAATATAAATGGAAACTTGTTATCTTATAAAGGGGTTGAAGCTGTGAGAGAGATCTTCAACAACTTTCCTCGTATGCTCGGGCCATTAGATGATAATGATCCTCATGGTGAGGATGGTTTTAATGAGCTTGAAATGAAGCAGAAAGAATAG 1533 42.6 MRSIKLWPPSHSTRLLLVDRIIRNLTTPSILSRKYGLLSKEEAEEEAKLIESAGYNAATQHFEKDPESDGGSAVQVYAKEASKLMVEFIKTGPKPKEHRETVPEIISSDHVFDISGGRRAFIEAEEAKELLKPLKEPGNKFTKICFSNRSFGLPAAHVAASVLSGVKDQLTEVDLSDIVSRRPEPEAVEVMRMFSSALAGCGLSYLNLSNNVLNEKGIRALGDLLKSQSNLVELYLENAGISPEAAKAVCELVPATAKLKVLHFHHNKTGDEGALAISQLVKGCPNLEDFRCSSTRVGSVGGIALAEALKTCTVLKKLDLRDNMFGPKAGVTLSNNLSKHTNLTEIYLSYMNLENEGVIALANTLKTSNSTLEVLEMTRNNITFEGANALADCICSKKHSITKIKLSENELKDEGAIVIAKALEGEFGRLFIVDLSENQIKTDGAMALAKAVVGKLGFRLLNINGNLLSYKGVEAVREIFNNFPRMLGPLDDNDPHGEDGFNELEMKQKE 510
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02363 510 Pfam WPP domain 3 98 IPR025265 -
Cobi2g02363 510 Gene3D WPP domain 3 101 IPR038214 -
Cobi2g02363 510 Pfam Leucine Rich repeat 368 391 IPR001611 GO:0005515(InterPro)
Cobi2g02363 510 Pfam Leucine Rich repeat 340 362 IPR001611 GO:0005515(InterPro)
Cobi2g02363 510 Pfam Leucine Rich repeat 258 278 IPR001611 GO:0005515(InterPro)
Cobi2g02363 510 Pfam Leucine Rich repeat 398 420 IPR001611 GO:0005515(InterPro)
Cobi2g02363 510 Pfam Leucine Rich repeat 433 449 IPR001611 GO:0005515(InterPro)
Cobi2g02363 510 MobiDBLite consensus disorder prediction 490 510 - -
Cobi2g02363 510 Gene3D Ribonuclease Inhibitor 107 493 IPR032675 -
Cobi2g02363 510 MobiDBLite consensus disorder prediction 491 510 - -
Cobi2g02363 510 SMART LRR-RI-2 312 339 - -
Cobi2g02363 510 SMART LRR-RI-2 200 227 - -
Cobi2g02363 510 SMART LRR-RI-2 284 311 - -
Cobi2g02363 510 SMART LRR-RI-2 256 283 - -
Cobi2g02363 510 SMART LRR-RI-2 228 255 - -
Cobi2g02363 510 SMART LRR-RI-2 340 367 - -
Cobi2g02363 510 SMART LRR-RI-2 398 425 - -
Cobi2g02363 510 SMART LRR-RI-2 427 454 - -
Cobi2g02363 510 SMART LRR-RI-2 369 396 - -
Cobi2g02363 510 SUPERFAMILY RNI-like 121 507 - -
Cobi2g02363 510 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 3 500 IPR045203 GO:0005096(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02363 K14319 Ran GTPase-activating protein 1
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
71425 Cobi2g02363 Cobi4g00733
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:71918145 Cobi4g00733 Cobi-Chr4:6621974 wgd
Cobi Cobi-Chr2:71918145 Cobi6g01056 Cobi-Chr6:8494890 wgd