AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02364 ATGGATGCTTCAAGAACCTCTTCTATTTGCTTCGGTATGGAATCTTTAGGGCTTGAAACCGACATCCCGGGATCAAAAACATATTGTAACCTAGGATTGAAACAAACGTCTAAGCAAAACCATGGGAATCCTAAAGTTTTATCGCTTTTGTCTTTAATTCTCGAGCGGTCGGTCCAAATGAACGAGACATTACTCGATAAGACACAAACGAAAGATGTAATAACAGTTTTTCATGGTTTAAGGGCACCGGGACTCAGCATTAAAGAGTACATTGAGAGAATATTCAAGTACTCGCATTGCAGCCCCTCTTGCTTTGTTGTCGCGCAAGTTTATATGGACCGGTTTATTCAGTGTGGAAATGTTAATTTGACTTCTTTAAGTGTTCATCGGCTTCTCATTACTAGTGTAATGCTCGCTGCAAAGTTCATTGATGATGCATTCTACAACAACGCGTATTATGCAAAAGTGGGAGGAGTAACAACAGCAGAAATGAACAGATTGGAGATGAAATTCCTGTTTGGTTTGGACTTTCGGCTCCACGTCAGCGTTGGGACGTTTGGCAGATACTGTTCCCAGTTGGAGAAACAAGTACCATGCGAGCTGCAAATTGAAAGACCACCAAGGGTGATTCACGCCCCGTGTGGACTTAAAGAATCCTGGTCCAGTAGTGAAGACTCAAGTACGTACGCTACAACAACAGAGATACATATTGTATAA 717 41.84 MDASRTSSICFGMESLGLETDIPGSKTYCNLGLKQTSKQNHGNPKVLSLLSLILERSVQMNETLLDKTQTKDVITVFHGLRAPGLSIKEYIERIFKYSHCSPSCFVVAQVYMDRFIQCGNVNLTSLSVHRLLITSVMLAAKFIDDAFYNNAYYAKVGGVTTAEMNRLEMKFLFGLDFRLHVSVGTFGRYCSQLEKQVPCELQIERPPRVIHAPCGLKESWSSSEDSSTYATTTEIHIV 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02364 238 Pfam Cyclin 63 179 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Cobi2g02364 238 SUPERFAMILY Cyclin-like 89 180 IPR036915 -
Cobi2g02364 238 Gene3D - 34 219 - -
Cobi2g02364 238 PANTHER UNCHARACTERIZED 36 220 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02364 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
71426 Cobi2g02364 Cobi7g00660
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:71925341 Cobi5g02264 Cobi-Chr5:65777323 dispersed
Cobi Cobi-Chr11:1512605 Cobi2g02364 Cobi-Chr2:71925341 transposed
Cobi Cobi-Chr5:6901377 Cobi2g02364 Cobi-Chr2:71925341 transposed
Cobi Cobi-Chr7:22508876 Cobi2g02364 Cobi-Chr2:71925341 transposed
Cobi Cobi-Chr9:26275557 Cobi2g02364 Cobi-Chr2:71925341 transposed
Cobi Cobi-Chr2:71925341 Cobi7g00660 Cobi-Chr7:5175145 wgd