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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02413 ATGGATACTGAAGTAAATGGAGAAAACGGCTCTATGGTTCTGATAAAGCAAGGGGCTGAAGCTAGAGTTTTCGAATCTACCTTTGCTGGAAGAAAGTCAATTGTTAAGGAACGGTTCTCAAAGAAGTACAGGCACCCGACTTTAGATTCAAAGCTCACGCTCAAGCGGTTAAATGCGGAGGCTAGATGTATGACAAAGGCTAGACGGCTTGGGGTTCATACTCCTGTGCTTTATGCAGTAGACCCTATATCGCATACACTCACTTTTGAGTATATTGAAGGTCCCTCTATCAAAGATATATTTCTTGATTTTGGAATTGAAGGAGTTGTTGAGGAAAAGATGGATGATATCGCCTTGCAAATTGGGGATACGATTGGAAAATTACATGATGGTGGGGTCGTTCATGGGGATTTGACCACGTCAAATATGTTATGGCGTACTGACACTAACCATCTGGTGTTGATTGATTTTGGTTTGAGCTTTGTATCAACCCTTCCGGAAGATAAAGCTGTTGATTTATATGTTCTTGAACGGGCCTTGCTATCAATGCATTCTTCTTGCGGGAATGTGATGGATAAGATACTTGCGGCGTATAGGAAGTCTTCAAAGCAATGGTCAGCCACATTTAACAAACTTGGTCAAGTGAGACTACGAGGTAGAAAACGAACCATGATCGGATGA 681 41.85 MDTEVNGENGSMVLIKQGAEARVFESTFAGRKSIVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVHTPVLYAVDPISHTLTFEYIEGPSIKDIFLDFGIEGVVEEKMDDIALQIGDTIGKLHDGGVVHGDLTTSNMLWRTDTNHLVLIDFGLSFVSTLPEDKAVDLYVLERALLSMHSSCGNVMDKILAAYRKSSKQWSATFNKLGQVRLRGRKRTMIG 226
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02413 226 NCBIfam KEOPS complex kinase-ATPase Bud32 18 220 IPR022495 GO:0004674(InterPro)
Cobi2g02413 226 SMART serkin-6 9 225 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02413 226 Gene3D Transferase(Phosphotransferase) domain 1 105 223 - -
Cobi2g02413 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Cobi2g02413 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02413 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Cobi2g02413 226 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Cobi2g02413 226 FunFam Protein kinase superfamily protein 107 223 - -
Cobi2g02413 226 PANTHER NON-SPECIFIC SERINE-THREONINE PROTEIN KINASE 8 226 IPR022495 GO:0000408(PANTHER)|GO:0004674(InterPro)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006468(PANTHER)|GO:0070525(PANTHER)
Cobi2g02413 226 Pfam Protein kinase domain 40 161 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02413 K08851 TP53 regulating kinase and related kinases [EC:2.7.11.1]
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi Pkinase 2.3e-10 CL0016 PK TKL-Pl-4