AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02424 ATGGAGAATTATGAGATTTTACAACAGATTGGTAAAGGCTCTTTTGCTTCTGCTCTGCTTGTCATCCATAAACATGAGAACAAAAGGTATGTTTTGAAGAAGATTCGGCTTGCTCGTCAGACCGATAGGATCCGCCGCTCTGCTCTCTTGGAGATGGAACTTATATCCACAGTGCAAAATCCTTTTATAGTGGAGTACAAAGATTCATGGGTTGAAAAGGGTTGCTATGTATGCATTGTTATAGCCTACTGTGAAGGAGGAGATATGGCGGAAGCAATCAAAAAAGCCAACGGTGTTCATTTTCCGGAAGAGAAACTCTGCAAATGGCTCGTTGAACTACTTGTGGCACTTGATTATTTACATGTTAATCATATCATTCATCGCGATGTCAAGTGTTCCAATATATTTCTAACACGAGATCAAGATATCCGACTTGGTGATTTTGGTCTTGCAAAAATGTTGACTGCTGATGATCTTGCATCCTCGGTTGTGGGAACTCCTAGTTATATGTGCCCTGAACTTCTAGCAGATATACCTTATGGTTCAAAATCAGACATATGGTCATTAGGATGCTGCATGTATGAAATGGCCGCGTTCAAGTCCGCATTTAAAGCTTTTGATATACAATCTTTGATCAACAAAATAAATAAATCCATAGTGTCTCCACTTCCAACCATGTATTCTGGCACATTCCGTGGGCTTATCAAGAGTATGCTGCGGAAAAACCCTGAAATGAGACCAAGCGCTGCTGATTTGCTCAATCATTCACATCTTCAACCTTATGTACTTAAACTCCATCTTAAAATGAACGGGCCTAGACGCCATACACTTCCAGCCCAGTGGCCCGATTACAACTATGAAAAGAAAACCACGTTCATTGAGCCCGAAGCCCGGCCTGTTAGCATACACAACGGGAAAAGACCGTCTTTTAGCAGTGACAGGGGTTTGAATCCAAGTGTATCTGAACATGATCAATATTCTTCGTGTTCACAAAGTTCAAGAAAGCTATCGATTGGCAGTGTTGAAGAGTATATACAAACAGAGAAGTTAGTAGCTGCCAGGTCTGCAAATGCTGTTAGAACTCCTGTAAAACGTTCTGTTGTTACTCCCAGAAGACAAATTGCTTCACCAAATATAATAACGAGTTCGGATCGTGATGTGCTTCCAGTATCACAAACGCCAGCCAGCATATCGTCGTCACGAACAACTCGTCGGGCATCTTTACCCTTATCAACCCGGGCCACGAAACCACATTTGGATTTCGAGTCACCAGATGTATCAGTCAACGCTCCACGCATTGACAAAATGACAGAACTACCCTTAAGCTACACACAACAACCCGTTATCCTACCAGCCCGTAAAAGTTCCTCAACATCCGCTCAATGCTCTACTACCACTTCATCAAACACCATTCGGGCAATCGACACGTGTACAGTCAAAGTCAAGACAATGAACCAAACAAGTGCTAGTGGGGCCTCAGATTCACGTAGGCATAGGTTTGACACGTCATCATACCAACAACGAGCCGAGGCGTTAGAAGGGTTGTTGGAGTTTAGTGCACAACTTATGCAACAACAACGGATAGAAGAGTTGGCGGTTTTGTTGAAACCATTCGGGCCTGAAAAGGTGTCGCCTAGAGAAACCGCAATTTGGTTGTCAAAGAGCTTGAAGAGAACAGAAACCGAAACCGGGCCCGTGACTAGTGTTGGGAATTTGTAG 1719 43.22 MENYEILQQIGKGSFASALLVIHKHENKRYVLKKIRLARQTDRIRRSALLEMELISTVQNPFIVEYKDSWVEKGCYVCIVIAYCEGGDMAEAIKKANGVHFPEEKLCKWLVELLVALDYLHVNHIIHRDVKCSNIFLTRDQDIRLGDFGLAKMLTADDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCMYEMAAFKSAFKAFDIQSLINKINKSIVSPLPTMYSGTFRGLIKSMLRKNPEMRPSAADLLNHSHLQPYVLKLHLKMNGPRRHTLPAQWPDYNYEKKTTFIEPEARPVSIHNGKRPSFSSDRGLNPSVSEHDQYSSCSQSSRKLSIGSVEEYIQTEKLVAARSANAVRTPVKRSVVTPRRQIASPNIITSSDRDVLPVSQTPASISSSRTTRRASLPLSTRATKPHLDFESPDVSVNAPRIDKMTELPLSYTQQPVILPARKSSSTSAQCSTTTSSNTIRAIDTCTVKVKTMNQTSASGASDSRRHRFDTSSYQQRAEALEGLLEFSAQLMQQQRIEELAVLLKPFGPEKVSPRETAIWLSKSLKRTETETGPVTSVGNL 572
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02424 572 MobiDBLite consensus disorder prediction 385 411 - -
Cobi2g02424 572 PANTHER SERINE-THREONINE-PROTEIN KINASE NEK 4 527 IPR050660 GO:0004674(PANTHER)
Cobi2g02424 572 CDD STKc-Nek 3 258 - -
Cobi2g02424 572 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02424 572 MobiDBLite consensus disorder prediction 297 332 - -
Cobi2g02424 572 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Cobi2g02424 572 Gene3D Transferase(Phosphotransferase) domain 1 79 272 - -
Cobi2g02424 572 FunFam Serine-threonine-protein kinase Nek3 86 333 - -
Cobi2g02424 572 ProSitePatterns Serine-Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cobi2g02424 572 SMART serkin-6 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02424 572 SUPERFAMILY Protein kinase-like (PK-like) 1 329 IPR011009 -
Cobi2g02424 572 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cobi2g02424 572 MobiDBLite consensus disorder prediction 305 332 - -
Cobi2g02424 572 MobiDBLite consensus disorder prediction 385 410 - -
Cobi2g02424 572 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02424 K08857 serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71437 Cobi2g02424 Cobi4g00755
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr11:19560088 Cobi2g02424 Cobi-Chr2:73182914 dispersed
Cobi Cobi-Chr2:73182914 Cobi9g01941 Cobi-Chr9:64000749 dispersed
Cobi Cobi-Chr5:65086941 Cobi2g02424 Cobi-Chr2:73182914 dispersed
Cobi Cobi-Chr2:73182914 Cobi4g00755 Cobi-Chr4:6788330 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi2g02424 ACH 67 333 MAP Kinase Kinase gene family AT4G29810 31.365 1.00e-34 132.0
Cobi6g00133 . 61 350 MAP Kinase Kinase gene family AT4G29810 30.717 5.10e-41 150.0
Cobi3g03653 WGDA 1 332 MAP Kinase Kinase gene family AT4G29810 68.072 1.04e-176 493.0
Cobi3g03351 WGDA 1 338 MAP Kinase Kinase gene family AT1G51660 70.381 1.72e-171 480.0
Cobi9g03073 . 1 475 MAP Kinase Kinase gene family AT5G40440 78.033 0.0 773.0
Cobi9g00124 . 67 350 MAP Kinase Kinase gene family AT4G29810 29.861 1.47e-37 142.0
Cobi7g02057 WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 69.209 0.0 532.0
Cobi7g02011 . 8 354 MAP Kinase Kinase gene family AT5G56580 81.844 0.0 597.0
Cobi7g01817 . 1 306 MAP Kinase Kinase gene family AT1G73500 64.725 1.40e-138 392.0
Cobi7g01621 WGDA 1 342 MAP Kinase Kinase gene family AT3G21220 72.254 6.26e-173 483.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi Pkinase 1.2e-61 CL0016 PK NEK