AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02442 ATGCCCATTGGTTCATCTCGTCCCATGGTTGGATCACAGCCCCCTGCTTTCAGGCCAACATCAGCTCCTGCTATGCCAAATACATCTCCATTTTCTTCTCCTGGGCCAGCAGCTGGATCTGGGACTCCTGGTTTTAGACCCATGCAACCAGGTAGGCCCACTCCTTCATATGGCCCACCAACTACAGGACCTCCCCAGCGTTTCCCAGCTCCACAGTTTCCTCAAACATCTCAACCACCCATGCCACAAACTTCCAATGTGGGCCAGCCAATGTTGCCACCTTCAATGAGACCACCTCCTCCTGCCCATGTTCCATCTGTACCAATGGGATCTCCACCTCAAAGCTTGTACAGTGTTCCTTCTAGCAATAATTCTCCATATTCTGTTTCTGGACAAAACATACAGCCACCACCATCTTCAACCAGACCGTCTTACCCTGGCTATCCAGGTATGCAAAGTAGCACAATAAGTCCTCCACCACCGCCGGTTTATAATCAAGGCGGTTATGCTCCACCTCAGCCCGCCATACCTGCTCCTTTTTCTTCTCATCAAGGTGGTTATGGACAAGTTCCACCAGCTGCATCATATGTAGGCGGCTCAGCGCCGCCTACAGGCGTTACATCAGGCTTGGTAGAAGATTTCAGCTCGCTTTCTCTAGGATCTGCTCCTGGGTCTTTTGATGGCGGGGTTGATGCTAAAGCGTTGCCAAGACCACTGGATGGTGATGTGGAACCGAGTTCTTTTGCTGGAATGTATCCCATGAATTGTGATTCTAGATATCTAAGACTTACAACTAGTGCTATTCCAAATTCACAGTCTTTGGTTTCTAGGTGGCACTTGCCTCTTGGAGCAGTTGTTTGTCCACTTGCAGAAACTCCTGAGGGGGAGGAAGTACCAATTGTTAATTTTGCCACAATGGGTATCGTTCGCTGTAGAAGATGCCGTACATATGTAAATCCATATGTGACTTTCACAGATGGTGGGAGAAAGTGGAGGTGCAATATATGTGCTTTACTTAACGATGTGCAAAATGATTATTTCGCTCATTTGGACGCCACTGGAAAAAGAGTTGATCTTGATCAACACCCTGAGCTTACAAAGGGTTCTGTTGAATTCGTTGCTCCAGCTGAATACATGGTTCGGCCTCCAATGCCACCATTATACTTCTTTATGATTGATGTGTCAATATCTGCAGTTAAAAGTGGAATGCTTGAGGTGATGGCACAAACTATTAAATCTTGTTTGGATAAATTGCCGGGAAACCCCAGAACACAAATTGGGTTTATAACTTTTGACAGCACAATTCACTTTTACAATATGAAGTCATCTTTGACTCAGCCTCAAATGATGGTCGTATCGGATTTAGATGATATTTTTGTTCCATTGCCAGATGATCTCCTTGTCAACCTGTCCGAATCAAGGCCTGTGGTGGAGGCATTCCTGGATAGCTTGCCTTCGATGTTTCAGGATAACGTTAATGTGGAATCTGCTTTCGGGCCCGCCCTCAAAGCAGCTTTTTTGGTTATGAGCCAACTTGGAGGGAAATTGTTAATTTTCCAGAGCACTCTTCCCTCACTTGGCATTGGTCGTTTGAAGTTGCGTGGAGACGATCTTCGTGTTTATGGAACAGATAAGGAGCATACTATAAGAATACCAGAAGACCCATTTTATAAACAGATGGCTGCTGATTTCACCAAATTTCAAGTTGCAGTTAATGTATATGCATTTAGTGACAAGTATACTGATATAGCCTCATTAGGCACTTTAGCGAAATACACTGGCGGCCAGGTTTATTATTATCCAAGTTTTCATTCTGCCATTCACAAAGACAAGTTGAGACATGAATTGGCTAGAGATCTCACTAGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGCGGGAAAGGAGTGCGCTTCACTTCATATCATGGGAATTTTATGCTAAGATCCACGGATCTACTGGCACTCCCAGCAGTTGATTGTGATAAAGCTTATGCAATGCAGTTTGCTCTTGAAGAGACACTGCTTACAACTCAGATTGTGTACTTTCAAGTGGCGTTACTATACACTGCATCTTGTGGTGAAAGGCGTATTAGAGTACACACTGCTGCAGCATCAGTGGTTGCAGATTTAGGAGAGATGTACCGCCAGGCAGACACTGGTGCGGTTGTTTCTTTGCTTGGTCGGTTAGCAATTGAGAAATCATTATCATATAAACTGGAAGATGCTCGTAGCGCTGTTCAACTAAAAATCGTGAAAGCCCTCAAAGAATACCGAAAACTCTATTCAGTGCAGCATCGTGTAGGAAGCAGAATGATCTACCCAGAATCACTCAAATATTTGCCCTTATATGGATTATCACTATGCAAATCAACAGCACTTCGTGGTGGTTATGCTGATGCACAGCTTGATGAACGATGTGCAGCAGGCTTCACCATGATGGCTTTACCTGTCAAGAAGATGTTAAAGCTCTTATACCCTAGCTTGTTGAGGGTAGACGAATATCTTATCAAGACACCTACTGTGGATGATGAATTTGACAAAATTTGTAAAAGGCTGCCACTTGTTGCAGAGAGCTTAGATTCTAGAGGAATTTATATATTTGATGATGGTTTCCGTTTTGTTGTGTGGTTTGGTCGTATGCTTTCACCAGATTTAGCCCGTAATCTAGTTGAGGAAGATTCAGCTACAGATTTCTCAAGGAATCAGGTTTGTCTGACCGAACGCAACAATGAAATGTCAAGAAAGCTGATGGGGATATTAAAGAAACTTAGAGAGGCTGATAAATCATATTATCAATTATGTCATCTTGTGAGACAAGGCGAACAGCCCCGGGAAGGTTTCTTTCTACTCTTGAATTTAATTGAGGATCAGGTTGGTGGTATGAGCGGTTATGCTGATTGGATGCTTCAGATTCATCGACAAAACGTGGATTTTTATTTTCCCGGAAGTTGGCTTCGAGCCAAAGCACAGGCGCATGCCAGTGTAAAATCACCTTTAGTTGATATTTGA 3015 43.78 MPIGSSRPMVGSQPPAFRPTSAPAMPNTSPFSSPGPAAGSGTPGFRPMQPGRPTPSYGPPTTGPPQRFPAPQFPQTSQPPMPQTSNVGQPMLPPSMRPPPPAHVPSVPMGSPPQSLYSVPSSNNSPYSVSGQNIQPPPSSTRPSYPGYPGMQSSTISPPPPPVYNQGGYAPPQPAIPAPFSSHQGGYGQVPPAASYVGGSAPPTGVTSGLVEDFSSLSLGSAPGSFDGGVDAKALPRPLDGDVEPSSFAGMYPMNCDSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAETPEGEEVPIVNFATMGIVRCRRCRTYVNPYVTFTDGGRKWRCNICALLNDVQNDYFAHLDATGKRVDLDQHPELTKGSVEFVAPAEYMVRPPMPPLYFFMIDVSISAVKSGMLEVMAQTIKSCLDKLPGNPRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRPVVEAFLDSLPSMFQDNVNVESAFGPALKAAFLVMSQLGGKLLIFQSTLPSLGIGRLKLRGDDLRVYGTDKEHTIRIPEDPFYKQMAADFTKFQVAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFHSAIHKDKLRHELARDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLLALPAVDCDKAYAMQFALEETLLTTQIVYFQVALLYTASCGERRIRVHTAAASVVADLGEMYRQADTGAVVSLLGRLAIEKSLSYKLEDARSAVQLKIVKALKEYRKLYSVQHRVGSRMIYPESLKYLPLYGLSLCKSTALRGGYADAQLDERCAAGFTMMALPVKKMLKLLYPSLLRVDEYLIKTPTVDDEFDKICKRLPLVAESLDSRGIYIFDDGFRFVVWFGRMLSPDLARNLVEEDSATDFSRNQVCLTERNNEMSRKLMGILKKLREADKSYYQLCHLVRQGEQPREGFFLLLNLIEDQVGGMSGYADWMLQIHRQNVDFYFPGSWLRAKAQAHASVKSPLVDI 1004
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02442 1004 SUPERFAMILY beta-sandwich domain of Sec23-24 141 718 - -
Cobi2g02442 1004 Pfam Sec23-Sec24 beta-sandwich domain 625 708 IPR012990 -
Cobi2g02442 1004 Pfam Gelsolin repeat 855 901 IPR007123 -
Cobi2g02442 1004 Pfam Sec23-Sec24 zinc finger 308 346 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Cobi2g02442 1004 FunFam protein transport protein Sec24D isoform X1 385 622 - -
Cobi2g02442 1004 CDD Sec24-like 383 624 IPR041742 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cobi2g02442 1004 SUPERFAMILY Helical domain of Sec23-24 720 827 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cobi2g02442 1004 MobiDBLite consensus disorder prediction 48 78 - -
Cobi2g02442 1004 PANTHER SEC24-RELATED PROTEIN 13 976 IPR050550 GO:0000149(PANTHER)|GO:0008270(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Cobi2g02442 1004 MobiDBLite consensus disorder prediction 22 36 - -
Cobi2g02442 1004 Gene3D Sec23-Sec24 helical domain 709 976 - -
Cobi2g02442 1004 MobiDBLite consensus disorder prediction 111 138 - -
Cobi2g02442 1004 Pfam Sec23-Sec24 trunk domain 383 619 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cobi2g02442 1004 SUPERFAMILY Zn-finger domain of Sec23-24 297 382 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Cobi2g02442 1004 MobiDBLite consensus disorder prediction 1 187 - -
Cobi2g02442 1004 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23-24 842 976 IPR036180 -
Cobi2g02442 1004 Gene3D Severin 828 958 IPR029006 -
Cobi2g02442 1004 MobiDBLite consensus disorder prediction 153 178 - -
Cobi2g02442 1004 MobiDBLite consensus disorder prediction 92 108 - -
Cobi2g02442 1004 Pfam Sec23-Sec24 helical domain 720 823 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cobi2g02442 1004 Gene3D - 255 367 - -
Cobi2g02442 1004 Gene3D - 256 708 - -
Cobi2g02442 1004 SUPERFAMILY vWA-like 383 622 IPR036465 -
Cobi2g02442 1004 Gene3D von Willebrand factor, type A domain 385 622 IPR036465 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02442 K14007 protein transport protein SEC24
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr10:10653496 Cobi2g02442 Cobi-Chr2:73473790 dispersed
Cobi Cobi-Chr2:73473790 Cobi4g00939 Cobi-Chr4:8439528 dispersed
Cobi Cobi-Chr2:73473790 Cobi6g01099 Cobi-Chr6:8906964 wgd