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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02453 ATGATAACACACCAAATATCTCTCCAATGGACTCCTCTACTCAAACACAAACCTCAGAAGAACCATTTATCATTCAACAACTTCAACACCAGATTACAACCTGTGAAGTCTTCATCCTTTGATTACAACCACCATACCACCCACTACGAGTACGAGAAAGGTTTAATTGGAAGCACCGGCCACCAATACCCTAGGCCGACGGAGGTCCCATGGAAGAAGGAACTCTGCAATTCCGTTCAACTCATCGGAACCGTCGGTACTCCGGTTGAGCTTAAGCAGCTTACCTCCGGCAAGGTCCTCGCTTGGTGCCGCCTCGCACTCAAGAAATCGTCAACCGATACTACCTGGGTTAATTTGACATTTTGGGATCAACTGGCGCATATTGCTTCTCACCATGTGGAAAAAGGCCAGCAGATATACGTCACGGGCCGTCTTGTTTCGGATACGGTTGACAGTGATGATGGCAAGCAACAGACATACTATAAGGTAGTTGTTCAACAGCTAAACTTTGTTGAAAGAAGCCCGCTTTCTAATAACGGAGACTTCAACTTCAATTCCAATTCCAATTCCAATTCCATTTCGAGCTCTATGACTATGACAACAGGCAATTACTTTTATAACTTATACCTGTCTTGA 636 44.65 MITHQISLQWTPLLKHKPQKNHLSFNNFNTRLQPVKSSSFDYNHHTTHYEYEKGLIGSTGHQYPRPTEVPWKKELCNSVQLIGTVGTPVELKQLTSGKVLAWCRLALKKSSTDTTWVNLTFWDQLAHIASHHVEKGQQIYVTGRLVSDTVDSDDGKQQTYYKVVVQQLNFVERSPLSNNGDFNFNSNSNSNSISSSMTMTTGNYFYNLYLS 211
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02453 211 Pfam Single-strand binding protein family 77 170 IPR000424 GO:0003697(InterPro)
Cobi2g02453 211 ProSiteProfiles Single-strand binding (SSB) domain profile. 75 172 IPR000424 GO:0003697(InterPro)
Cobi2g02453 211 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 40 175 IPR011344 GO:0003697(InterPro)|GO:0003697(PANTHER)|GO:0006260(InterPro)|GO:0006264(PANTHER)|GO:0009295(PANTHER)|GO:0042645(PANTHER)|GO:0051096(PANTHER)
Cobi2g02453 211 NCBIfam single-stranded DNA-binding protein 76 192 IPR011344 GO:0003697(InterPro)|GO:0006260(InterPro)
Cobi2g02453 211 Gene3D - 73 181 IPR012340 -
Cobi2g02453 211 SUPERFAMILY Nucleic acid-binding proteins 76 197 IPR012340 -
Cobi2g02453 211 CDD SSB-OBF 79 170 IPR000424 GO:0003697(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02453 K03111 single-strand DNA-binding protein