AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02462 ATGGCTGCCACAAATGAATTCATGCATCACTTATCAATGGCTGCCTGTGAATGGTTCTTGATGTTGTTGATGTATATTGAAGCTGCATTGGGCTTCATTCTAACCAGATTTGCACATCAATGTGAATTGCAAACGCCTTGTTTATATTGCTTCCGGTTTGATCATGTTTTTGGTGACAGACCTGATTCTTATTTGACTCACTTTTGTAATAAACACCGTGCTGAGGTTTCGTGTTTGATAGCGTGTGATCTTCACCATAAACTCTCGGATGTAAGAGAAATGTGTGATGATTGTTTCATGTCAATCGCTAACGCAAAGCGTGACCAAGTTTCCAGGTTTAAACCTTTCTTGAACAAGAATTTTGAGCGCTCGCCTTCAAGTACCGGGTTGTGTTCGTGCTGTAAACGACCGTGGAAACCGAAACCGAGACCTCAAGTGAAGTTAGGGGTTAAGAAACTTTCCATGCATCCTCCGTTACCGGGCCGGTACCGCCGCCGGAGTCTTTTAAAAAAGGCTCGTGATAAGATCTCCGGCACCATGACTCCTTGTAGTGTCGAGAGTAGTATCCATGTGGACACTGACATTGACGCGTTATCCGATTCAGGCTGTGCTGATCTTAAGTTTAATTCGTGTTCTTCTGAATCTGGCGACTCATTTTATGAAATCGAGTGCGAAAATGATGGTTTTGAGGATTTTTCTTGTGTTATTATACATAAAGCAAAATCTTTTAACACAACCCGTACTAGCAAGAGTATAACGAGTCCATTATCTTCAACATCGAGTGGTTTAACCAAGCATGGTGTAGAACAGAACGGGTCTCCAGAATTCAATCTAGATTTGCATTCTGTTAACGATGACATAGAGCAAAACGGGTCTCCAGATTTCAATCAAGATTTGCATTCTGTTAACAATGACGTAGAACAAAACGGATCTCCAGGATTCAATCAAGATTTGCATTCTGTGGCATCGAGTTCTTCATCAGATAAACATGAAGGTTATGAATCACCGGGCAAACACAGTGTAAGTAATTTCAAGAATAACTATGACATAGAAAAGCTCAAACGACAGATGGAACACGATCAAGAACAGTTGCGGTTATTACACAGGGAATTAGAGGAAGAAAGAAACGCAGCTGCAATAGCTGCTGATGAGGCGATGGCCATGATTACAAGATTACAAGAAGAAAAATCGGCTTTGCATATGGAAGCGTTACAATATTTAAGAATGATGGATGAACAAGCAGAATATGATATGGAAGCTTTAGATAAAGCCAATGATCTTATCACTGAAAAAGATAAAGAAATTCAAGATATTGAAGCTGAGCTGGAGTTTTTCAGAAGCCGATACGATGATGAAACAGTTAATTTCAAAGAAAACCATATGGGAAATGGAGAAACTTTGAACTTGTTAGACTTGAGGGTTAGTAATAATAACCCGGTTTTGGATCTTGAAGATGAAAAGACTTATGTTTTACAGTCTTTATTAGAGTCGGAAAAGAAGCTTTCTAATGGTGATAAATCGTTACAGCAAAGTGAAATTGAGAATGAAGTATTGGATCTTAATGATTGGTTAGAAGCAGTTGAATCTGATCGGGATTTTCTTGAGCATGCATGTAACACAGTCCAGAGTCACGTGGGATTAGAGTTTATTCAAGAAATAGCTCGGCATTTGCATGATTTGAGGAGGGCTCGGTTTGATAGAAGATGCCAAACGGTTGATTGA 1722 39.55 MAATNEFMHHLSMAACEWFLMLLMYIEAALGFILTRFAHQCELQTPCLYCFRFDHVFGDRPDSYLTHFCNKHRAEVSCLIACDLHHKLSDVREMCDDCFMSIANAKRDQVSRFKPFLNKNFERSPSSTGLCSCCKRPWKPKPRPQVKLGVKKLSMHPPLPGRYRRRSLLKKARDKISGTMTPCSVESSIHVDTDIDALSDSGCADLKFNSCSSESGDSFYEIECENDGFEDFSCVIIHKAKSFNTTRTSKSITSPLSSTSSGLTKHGVEQNGSPEFNLDLHSVNDDIEQNGSPDFNQDLHSVNNDVEQNGSPGFNQDLHSVASSSSSDKHEGYESPGKHSVSNFKNNYDIEKLKRQMEHDQEQLRLLHRELEEERNAAAIAADEAMAMITRLQEEKSALHMEALQYLRMMDEQAEYDMEALDKANDLITEKDKEIQDIEAELEFFRSRYDDETVNFKENHMGNGETLNLLDLRVSNNNPVLDLEDEKTYVLQSLLESEKKLSNGDKSLQQSEIENEVLDLNDWLEAVESDRDFLEHACNTVQSHVGLEFIQEIARHLHDLRRARFDRRCQTVD 573
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02462 573 Pfam Zein-binding 352 442 IPR007656 -
Cobi2g02462 573 Coils Coil 350 402 - -
Cobi2g02462 573 MobiDBLite consensus disorder prediction 247 344 - -
Cobi2g02462 573 ProSiteProfiles GTD-binding domain profile. 348 446 IPR007656 -
Cobi2g02462 573 Coils Coil 421 455 - -
Cobi2g02462 573 PANTHER MYOSIN-BINDING PROTEIN 2 258 567 IPR039306 GO:0017022(InterPro)
Cobi2g02462 573 MobiDBLite consensus disorder prediction 247 330 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02462 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr1:81328530 Cobi2g02462 Cobi-Chr2:73870861 dispersed
Cobi Cobi-Chr2:73870861 Cobi4g00606 Cobi-Chr4:5545247 dispersed
Cobi Cobi-Chr2:73870861 Cobi8g01351 Cobi-Chr8:63754560 transposed