AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi3g02275 ATGAAGTCATCATTTGGGAAAATTGGGCGTAAACTTACGATGCACAAGGAGGCGCGAGATCATCAGCCTTCTGTACGTTTAGATGAGCTTCATCAGGCTTCTAAGGATATGCAAGATATGAGAAACTGCTATGACGGCTTATTAGCTGCAGCTGCTGCAACCGCAAATAGTATATACGAATTTTCGGAGGCGCTAAATGAAATGGGGAATTGCTTGCTGGGGAAAACCACTGCTGCCTGTGATGCTGAAAGTGGAAGCGTGCTCTCAATGTTGGGGAAATTGCAATTGGAACTTGAGAAAATTGCCGATACTTACCGTTCTTATGTAATCGTGACAATCACCAATCCAGCGGAGTCTCTCCTTAGTGAGTTAGTTAAAGTGGAGGAAATGAAATTTCAATGTTCTGAAAAAAGAGAAGTTTATGATCACATGGTGGCTCAACATAGAGAGAAGGGTAAACTGAAAACCGGTAAACTTGAAAGCTCAATTGCACAAAAACTGCAAGAAGCTCAAGATGAATATGATGATGTGGCGAGACTATGTGTATTTAGGGCAAAATCACTTAAAGAAGGACAATGGCGCAGTCTTTTAACACAAGCTGCTCGCCATCATACCGCACAGTTGAATTTCTTTCGCAAGGGGCTTAAAGCGGTTGAAGCAGTTGAACCTTTTATAAGAAATGTTGCAGAAAAGCATCGAATTGATTGCCAACTCAGTGGGTCCCAGGAAAGTGAACCTATGAATGGACATGAAGGCACTAATGATGGAGAGTTGGGTTTTGATTATAAACAAAAGAAGCAAGGACTTGATGATGGCACCTTACCAAATCCAATGGAGGTGGACCAGGTAGATTTCCCGTTTATTCAAGCTTCAAATTTAGAAGATTTAGAGATAAATCAGAACCGACATAAAACAGAGCATCTTTTCGGTAGGCAAACTAGAGTTAGCAGCTACTCAGCTCCATTATACCCGGAGAAGATTAACACATCTGAAAAGCTTAAAGAAGCCCAACCCAGCCCAATATCTTATTCGTACGTCCTACCCCCACCTGTTGGAGACACCCGAAATCCAGTTTCAAAACCTCCTCCATCTATTTCTCATGCCAACCCGTTTCCAAATCTACAGCACGATAATACACCGACCGCTCCTTTGACCTCAAGAACCAAGTCAACAATTAATACTGGTAACATTATCACCCCATCAATCCAATTACCTGCTCCCACCGCAAGATTTTCATTCTCACAAGATAATTATAACAAAACCGATGGTAGTAAAGCAGACAGACGACAATCTTACTCGGGCCCGTTACCACCGAGCAAGCAGTTTTCTTTCAAAATGTCATCTAATAGTAGCGGGCCCATTACTTCAACCGAGCTTCCTTCTCGGGCCTCAATTTCTAAGCCTAATTTGTCAAGTAATACTTCTCCTAAAATAAGTGAGCTTCACGAGCTTCCTAGACCACCTTCTAAACCCGCTGCTATTTCGGGAGGTTTGAACCGACATTCAGCACCGTTACTTTCCAAAAATCAAGAAATTTCCCCGCCTAATAAACGTGCTATGCTAACATCAACTTGTGCATCACCTCTCCCGCTTCCGCCTACAGTTGTGAAATTCAACCCAACTAACAAAGTAGCCTCTTGTCTGGCCCCTGTTGAAGGTTGA 1662 42.72 MKSSFGKIGRKLTMHKEARDHQPSVRLDELHQASKDMQDMRNCYDGLLAAAAATANSIYEFSEALNEMGNCLLGKTTAACDAESGSVLSMLGKLQLELEKIADTYRSYVIVTITNPAESLLSELVKVEEMKFQCSEKREVYDHMVAQHREKGKLKTGKLESSIAQKLQEAQDEYDDVARLCVFRAKSLKEGQWRSLLTQAARHHTAQLNFFRKGLKAVEAVEPFIRNVAEKHRIDCQLSGSQESEPMNGHEGTNDGELGFDYKQKKQGLDDGTLPNPMEVDQVDFPFIQASNLEDLEINQNRHKTEHLFGRQTRVSSYSAPLYPEKINTSEKLKEAQPSPISYSYVLPPPVGDTRNPVSKPPPSISHANPFPNLQHDNTPTAPLTSRTKSTINTGNIITPSIQLPAPTARFSFSQDNYNKTDGSKADRRQSYSGPLPPSKQFSFKMSSNSSGPITSTELPSRASISKPNLSSNTSPKISELHELPRPPSKPAAISGGLNRHSAPLLSKNQEISPPNKRAMLTSTCASPLPLPPTVVKFNPTNKVASCLAPVEG 553
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi3g02275 553 MobiDBLite consensus disorder prediction 502 516 - -
Cobi3g02275 553 MobiDBLite consensus disorder prediction 434 479 - -
Cobi3g02275 553 MobiDBLite consensus disorder prediction 1 26 - -
Cobi3g02275 553 CDD BAR 26 223 - -
Cobi3g02275 553 MobiDBLite consensus disorder prediction 369 420 - -
Cobi3g02275 553 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 536 IPR037488 -
Cobi3g02275 553 Gene3D Arfaptin homology (AH) domain-BAR domain 16 246 IPR027267 -
Cobi3g02275 553 MobiDBLite consensus disorder prediction 352 516 - -
Cobi3g02275 553 MobiDBLite consensus disorder prediction 10 26 - -
Cobi3g02275 553 SUPERFAMILY BAR-IMD domain-like 28 226 IPR027267 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi3g02275 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
70615 Cobi1g03660 Cobi3g02275
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:70722210 Cobi5g00802 Cobi-Chr5:8558779 dispersed
Cobi Cobi-Chr1:85201589 Cobi3g02275 Cobi-Chr3:70722210 wgd