AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi3g02278 ATGGGGTGTGCGGTTTCTGTGTACAGAGTCGGAGGTAACAAGAAGCCGATGAAGATCCCTGTGGTAACCGTGTTCGCACCTTCACTTCGTGTTCCCGTCAACTCCAGCTTTCAAAAACATCTTAGAGGAATTGTCCCCAAGGATCTCACCGATCGCCTCACCTCCTTTCGGAATCAAATCGCTCTTCTCGCTCAACAAACTGATGTTTCAGCTATTCCGGAACTATTACGTTCGTTGGAGGATTACTTATCGCTCTTGGTTGGCCTCACTGATCAAGGGTTTCAAGATGCGATTGAATTCAAATGGAAAAGTTTAGACGAGGGACGACAGGACATCAGTGTTGCTGATTCATGGTTCGAATTACTATGTGTTGTTCATATGATGGGTATGCTGACATTAATGGAGGCAAATTCAAAACTGGTTCCTGATCAATATGTTTGTAGTGAAACAGTTGAATCTACAGATGATATCAGGTCAGCTGTTGACTTGTTGGTCAAAGCAGCAGGGTACCTGCAGTTCTGTCTTCATGAAATTCTAGTTCAAATTCCACCTGATATAAAGATGCAGCTGCCTGTCGATTTGCAGGAGAATCTACTCGAGGCTGCTTATATTCAAGCACTAGGGCAGGGAACAGAAATGCAACTTGCTTCGGCCGTTGACTGTAAAAACGCCACTTTATCTGTTAAAAGAAGACTCGCATGCGAACAATTAAGTTATTTCAGCCAGGCACACTACTGCTTATCGACATGTGACAAACTTAACGGATATGGAAAGAAACATCTTTCATTTATCAAATGGAAGTACCTTGAAGCAAAGGCTGCAGCATACTACTATCATGGTCTGATCACAGACAAGGGTACGGAACCATCCTGCCACATCAGTGCAGTGTGTTGTTTTCTTGCTGCAGAAGAGATATTAACCGAGAGCAAGAAGGCGTGCTTAAACTTTTGCTTAACGGCTCCCATAACAAGGGCTCCAACTGCATGGGGTGCTATGAAACATTTGAATAAGAAAATTCCTGAAATTGCAGCTAATAAGTCACAAATGTACGCCTACCTTTTAGAGGAAGAAAAGAGTCTTCAAGTGTTACCAGAACTACCTGAATTTGAGTTATCATTAAAAGCAGACGAATATAAATTGCCGAATAAAGATGCTGCATGGGAGTGTGAAAAATGGAAAATACCTACTCAAACACTTAAAACTCATTTAAAAGATGACGAAGAAGATGATAAATGA 1236 41.83 MGCAVSVYRVGGNKKPMKIPVVTVFAPSLRVPVNSSFQKHLRGIVPKDLTDRLTSFRNQIALLAQQTDVSAIPELLRSLEDYLSLLVGLTDQGFQDAIEFKWKSLDEGRQDISVADSWFELLCVVHMMGMLTLMEANSKLVPDQYVCSETVESTDDIRSAVDLLVKAAGYLQFCLHEILVQIPPDIKMQLPVDLQENLLEAAYIQALGQGTEMQLASAVDCKNATLSVKRRLACEQLSYFSQAHYCLSTCDKLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHISAVCCFLAAEEILTESKKACLNFCLTAPITRAPTAWGAMKHLNKKIPEIAANKSQMYAYLLEEEKSLQVLPELPEFELSLKADEYKLPNKDAAWECEKWKIPTQTLKTHLKDDEEDDK 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi3g02278 411 SMART BRO1-2 23 399 IPR004328 -
Cobi3g02278 411 CDD BRO1-Alix-like 10 374 - -
Cobi3g02278 411 Pfam BRO1-like domain 50 309 IPR004328 -
Cobi3g02278 411 PANTHER UNCHARACTERIZED 14 400 IPR038898 -
Cobi3g02278 411 ProSiteProfiles BRO1 domain profile. 6 411 IPR004328 -
Cobi3g02278 411 Gene3D alix-aip1 like domains 33 394 IPR038499 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi3g02278 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:70776494 Cobi8g00668 Cobi-Chr8:40101524 dispersed
Cobi Cobi-Chr3:70776494 Cobi11g02282 Cobi-Chr11:66438126 transposed