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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi3g02279 ATGTCATCGCTCTGCGACTTCTGCAACGAGAAACCGGCTGTCCTTTACTGCAAAGCCGATTCAGCTAAGCTCTGTTTGTTCTGCGACTCCGCCGTACACTCTGCTAACGCACTCTCTCTCAAGCATCTCCGCTCTCAGATCTGCGACAACTGCGCCTCTGACGCCGTCTCCGTCGCTTGTGCCACCGAAAACCTCCTCCTCTGCACCTCCTGCGACCACGATTTCCACTCCGTCTCCTCCTACCATAACCGTTACCCTGTCGATGAGATCACCGGCTGCCCCAACGTCTCTGAACTCGCTTCAGCTTGGGGATTTACTTTGAAACCTTCTCTTTCCGACAATTCCTCTGAGAATAAGCATCCGCCTGCCGATTTCCACTCGTTTCGTGATGAAACTGATTGCTATGATGAGGTTCCTAGTGTTAAGTGGAAACCAACCGCTTCCGGATGTGGAGTTTATCAGAAGGTGTTGTATAAGCAGCTATTGGATCTTGCCAAGGAACGATTTGACGCTGATGGAGCTGAATTAGGGCCTCAGACTCCGAGTGGATGTGGTCGGCCGGAGATCTCGGAAGGGTTTGAGTTTGAGGAGCAAGATGAGAGGGATTTGTTGAATCAGCAAACGCCGTTGACGTATTTGCTATTGCCTTCGCAGAATTTACCCAATTCCAATGCGAATAATGTTACCGAGTTTAGTAACATGTGGAGTTATAGCCCTAAACCCAAAACAAGTCAGATATGGGATTTCAATCTCGGAAAATCAAGATCTCCTGAGGCAAGATGTGATAATCTTGGATTTTCAATTAACAACTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGTTAAAAGAAATGGAGGCCATAAACATACCTATTGCCACAAATCCATCGCATACTATATCTGGTTGCAGATCAACAATGGAGAGTAGCACCCGACAAATAACCGGACCATCATCTGAAACAAAAATGATTGAAATCAATGGCTGTGATTCGATCATGGATGGTCAAATGATAGACGGGTTTTTGACAACCAGTCAAGGAATAGAATTACCATCAACAACCAAAATGGATGCTCAACAGTTTGCACAGAACAGAAGCAATGCAATGCTACGTTACAAGGAAAAAAAGAAAACGCGAAGGTATGAGAAGTGCATCAGATATGAGTCACGAAAGGCAAGGGCTGATACTAGAAAACGAGTAAAGGGCCGGTTTGTGAAGACAATTCAATGA 1242 45.65 MSSLCDFCNEKPAVLYCKADSAKLCLFCDSAVHSANALSLKHLRSQICDNCASDAVSVACATENLLLCTSCDHDFHSVSSYHNRYPVDEITGCPNVSELASAWGFTLKPSLSDNSSENKHPPADFHSFRDETDCYDEVPSVKWKPTASGCGVYQKVLYKQLLDLAKERFDADGAELGPQTPSGCGRPEISEGFEFEEQDERDLLNQQTPLTYLLLPSQNLPNSNANNVTEFSNMWSYSPKPKTSQIWDFNLGKSRSPEARCDNLGFSINNCTDLVEDASFTTMEVLKEMEAINIPIATNPSHTISGCRSTMESSTRQITGPSSETKMIEINGCDSIMDGQMIDGFLTTSQGIELPSTTKMDAQQFAQNRSNAMLRYKEKKKTRRYEKCIRYESRKARADTRKRVKGRFVKTIQ 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi3g02279 413 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515(InterPro)
Cobi3g02279 413 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
Cobi3g02279 413 Pfam CCT motif 369 410 IPR010402 GO:0005515(InterPro)
Cobi3g02279 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 410 - -
Cobi3g02279 413 CDD Bbox1-BBX-like 4 47 IPR049808 -
Cobi3g02279 413 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Cobi3g02279 413 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cobi3g02279 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi3g02279 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:70780378 Cobi4g03165 Cobi-Chr4:81205300 dispersed
Cobi Cobi-Chr2:8832982 Cobi3g02279 Cobi-Chr3:70780378 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi2g00525 . 10 301 C2C2-CO-like Transcription Factor family AT1G68190 35.276 1.78e-53 179.0
Cobi3g00296 ACH,WGDA 191 276 C2C2-CO-like Transcription Factor family AT2G24790 44.186 1.64e-12 65.5
Cobi3g00620 WGDA 7 273 C2C2-CO-like Transcription Factor family AT2G24790 44.944 4.79e-57 180.0
Cobi3g00922 . 3 166 C2C2-CO-like Transcription Factor family AT4G27310 36.97 4.22e-29 106.0
Cobi3g01119 . 1 297 C2C2-CO-like Transcription Factor family AT1G78600 53.376 6.40e-97 286.0
Cobi3g01157 ACH,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.243 2.61e-134 386.0
Cobi1g03258 . 8 328 C2C2-CO-like Transcription Factor family AT2G47890 46.24 2.70e-92 278.0
Cobi1g03400 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 28.384 1.85e-11 58.9
Cobi1g04445 ACH 1 330 C2C2-CO-like Transcription Factor family AT1G75540 46.243 6.80e-73 226.0
Cobi1g05006 . 207 347 C2C2-CO-like Transcription Factor family AT3G02380 53.901 1.49e-40 136.0
Cobi2g03024 . 26 91 C2C2-CO-like Transcription Factor family AT2G24790 71.642 4.35e-28 105.0
Cobi2g02834 . 283 346 C2C2-CO-like Transcription Factor family AT5G57660 50.0 2.03e-15 73.2
Cobi2g02802 ACH,WGDA 168 331 C2C2-CO-like Transcription Factor family AT1G75540 36.686 2.94e-13 64.3
Cobi2g01449 ACH 257 329 C2C2-CO-like Transcription Factor family AT5G57660 44.737 8.13e-10 56.2
Cobi1g00856 . 1 62 C2C2-CO-like Transcription Factor family AT3G07650 77.419 8.63e-25 97.8
Cobi11g00015 ACH 275 327 C2C2-CO-like Transcription Factor family AT5G15850 52.83 1.85e-10 58.5
Cobi11g02503 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 54.04 1.10e-60 192.0
Cobi11g02564 ACH 14 373 C2C2-CO-like Transcription Factor family AT5G48250 54.571 8.68e-127 365.0
Cobi11g02775 . 11 328 C2C2-CO-like Transcription Factor family AT2G47890 45.504 5.62e-95 285.0
Cobi9g00747 ACH 309 388 C2C2-CO-like Transcription Factor family AT5G24930 38.75 1.94e-11 63.2
Cobi5g01403 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 56.951 1.26e-80 237.0
Cobi5g01462 . 3 87 C2C2-CO-like Transcription Factor family AT4G27310 51.724 3.55e-24 92.8
Cobi5g01463 . 3 210 C2C2-CO-like Transcription Factor family AT4G27310 36.364 2.37e-24 92.8
Cobi6g03685 ACH 284 351 C2C2-CO-like Transcription Factor family AT5G57660 44.118 2.52e-10 58.9
Cobi10g01205 . 9 355 C2C2-CO-like Transcription Factor family AT5G57660 39.548 2.30e-67 212.0
Cobi12g02321 ACH,WGDA 14 357 C2C2-CO-like Transcription Factor family AT3G07650 49.185 2.80e-104 309.0
Cobi12g02009 WGDA 45 396 C2C2-CO-like Transcription Factor family AT5G24930 50.276 6.77e-97 292.0
Cobi12g01719 ACH,WGDA 201 276 C2C2-CO-like Transcription Factor family AT2G24790 43.59 2.08e-13 67.0
Cobi12g00711 ACH 259 319 C2C2-CO-like Transcription Factor family AT3G02380 45.902 1.17e-11 60.5
Cobi6g01256 . 1 205 C2C2-CO-like Transcription Factor family AT1G75540 53.302 4.54e-64 198.0
Cobi3g03460 . 4 355 C2C2-CO-like Transcription Factor family AT5G57660 45.244 1.43e-95 288.0
Cobi3g03194 ACH 1 336 C2C2-CO-like Transcription Factor family AT5G48250 53.254 5.99e-105 318.0
Cobi3g02405 ACH,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 44.51 6.39e-78 238.0
Cobi3g02279 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 37.53 1.24e-74 236.0
Cobi3g02246 . 287 400 C2C2-CO-like Transcription Factor family AT1G68520 38.298 1.17e-18 84.0
Cobih2tg0044l_1g00015 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 55.612 2.86e-64 199.0
Cobi9g03185 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.392 1.12e-122 357.0
Cobi8g02642 . 289 392 C2C2-CO-like Transcription Factor family AT1G68520 39.259 1.66e-15 75.1
Cobi4g03334 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 55.102 9.51e-64 198.0
Cobi7g02313 . 4 97 C2C2-CO-like Transcription Factor family AT5G54470 50.505 2.25e-28 104.0
Cobi7g00931 . 237 322 C2C2-CO-like Transcription Factor family AT1G49130 46.667 2.76e-15 71.6
Cobi1g01848 WGDA 145 270 C2C2-CO-like Transcription Factor family AT2G24790 31.618 5.05e-11 59.7
Cobih2tg0135l_1g00011 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.827 8.98e-134 386.0
Cobi9g01550 ACH 315 386 C2C2-CO-like Transcription Factor family AT5G24930 42.466 7.60e-12 60.5
Cobi4g03165 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 51.074 1.11e-128 373.0
Cobi4g02769 . 238 347 C2C2-CO-like Transcription Factor family AT5G15840 33.636 1.63e-09 55.8
Cobi8g01615 . 3 85 C2C2-CO-like Transcription Factor family AT4G27310 47.917 4.76e-25 93.6
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi CCT 1e-15 CL0281 TF C2C2-CO-like