AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02542 ATGTTATGTCTTTCATCGATCGGGAAAACTGTGATGAGCACTAAGAAGCTCCGTACACCTTCAGAAGTTGTTCGAAAGACTCGTTCCCTTCTCCTTTACTCCAAGAGCTCGCTTGATGCCGGCTCGCAGATGACTGAACTGAACTCACTAATCAGAGAACTAAAGTTGATACTTTACGGAGATGATGAATCTGAGCCTTCTGCTGACGCTTGCGCACAATTAACTTTGGAGTTCTTTAGAGAAGACACATTGCGTTTGCTCATTGTCTTTCTTCCCAAGTTGAACTTGGAGGCGCGTAAAGATGCCACGCAAGTCATCGTGAGTTTGCAAAGGCAACCGTTGCCGTCACGCTTTGAGGCTTCAAGATATTTGGAAGCTAATCTTGATCTTTTAGACATTCTCGTATCAGGGTATGAGGATCCTCAACTGGCTCTTCATTATGGTAGGATGTTGAAGGAGTGCTTACGCCATCAAATTGTTGCAAGTTACTTACTAGAACCGACTCAACTCAAGAAACTTTTTGATTACATACAGCATCCAAGTTTCGATATTGCTGCAGATGCCGCTGATGCATTCAAGGATCTTTTGACTAGACATAAGTCTACTGTTTCTGAATCTTTGTCCAAAAACTATTGTTGGTTTTTTACGGAAATGAACGAAAAGTTACTGAAATCTGCAAATTATATCACCAAAAGACAAGCTGTCAAGCTACTAGGATGCATATTGCTTGATCGTTCGAATTTTTGTGTTATGACGCGATATGTAAGCTCAAAAGATAACCTGATAATTCTAATGAATCTGCTAAGGGATCAAAGTAAGAATATACAGATAGATGCTTTTCATGTGTTCAAGTTATTTGTAGCAAATGAAAATAAGCCTCCGGAAATAGTGAGCATACTTGTTACAAACCGAAGCAAGATTCTACGTTTGCTTAATGCTTTTGGTTATACAGATGATGAAGTGTTTGAGACAGACAAAATTCAGGTGGTCAATAAACTATCTGTACTGGAGCTTCAAGACTAA 1023 39.59 MLCLSSIGKTVMSTKKLRTPSEVVRKTRSLLLYSKSSLDAGSQMTELNSLIRELKLILYGDDESEPSADACAQLTLEFFREDTLRLLIVFLPKLNLEARKDATQVIVSLQRQPLPSRFEASRYLEANLDLLDILVSGYEDPQLALHYGRMLKECLRHQIVASYLLEPTQLKKLFDYIQHPSFDIAADAADAFKDLLTRHKSTVSESLSKNYCWFFTEMNEKLLKSANYITKRQAVKLLGCILLDRSNFCVMTRYVSSKDNLIILMNLLRDQSKNIQIDAFHVFKLFVANENKPPEIVSILVTNRSKILRLLNAFGYTDDEVFETDKIQVVNKLSVLELQD 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02542 340 Gene3D - 16 337 IPR011989 -
Cobi4g02542 340 Pfam Mo25-like 15 336 IPR013878 -
Cobi4g02542 340 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 13 337 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Cobi4g02542 340 SUPERFAMILY ARM repeat 18 334 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02542 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:745226 Cobi4g02542 Cobi-Chr4:67720328 dispersed
Cobi Cobi-Chr4:67720328 Cobi6g03406 Cobi-Chr6:58581512 dispersed
Cobi Cobi-Chr4:67720328 Cobi3g01210 Cobi-Chr3:15873620 transposed