AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02664 ATGCCTAAAGTTCCATTGTGGGATCTGCCTGTACTGCCACAGAATAGTAACAATCAGCTTCCGCTTCATCTTCAACTCCAGAAAACTCGTGTCTCCTGCAACAAGGATGCTCCAACTCATACAGAGGATATAATCTACTCCGGTGCGTATGCAGCGTTGGGAGTGGATAACAGTTTAAGGCTTGATGAATTTAGGAAAAACTTTAAAGTCAATGTGATTAGGCTCGATAAAGAAGATATAGAGTTTGATTTGATCGGAATTGATGCTTCCATTGCCAATGCTTTTAGAAGAATCCTCATATCGGAGCTGCCTACTATGGCTATTGAGAAGGTTCTTGTTGCAAACAATACGTCAGTTGTACAAGATGAAGTTCTTGCACACCGACTAGGTCTCGTTCCAATAAAAGTTGATCCAAGGGTGTTCGATTATATGTCAGTAAATGACGTCCCTAATGAGAAAAACACCATTGTTTTCAAACTCCATGTTAAGTGTGATAAGAAACGTGGTGAACGCCTCACAGTGTACTCTCATGATCTTAAGTGGTTGCCATCTGGCAGTGAATTTGTTCTGTCCACTGAAAAAAATGCTTCAGACTCGACATCAAAACCGAAAACTTACACGTCATTCACTTCCCAGCAAGATTTTTTACAAGAATTTGTAATTCCCGTCCAAGATTCTTTACCAAAATCTGTCACTCCCGGCCAAGATATTTCACCAACATTTGTCACGCACGGTATTATTTTATCAAAACTCGGGCCTGGACAGGAAATTGAGCTGGAAGCACATGCTATTAAAGGTATTGGTAAAACACATGCCAAGTGGTCTCCTGTTGCAACTGCTTGGTACCGAATGCTTCCTGAGGTTGTATTGCTGCAAGACATTGAGGACGAGGATGCTGAGAAACTTGTAAAAAAATGCCCTGTCAATGTGTTTGACATTGAAGATATGGGTAAAGGTGTGAAGAGGGCAACTGTGGCTAGACCACGAGACTGTACACTGTGTCGGGAATGCATTCAAGAGGGATGGGAGGAAAAAGTGGCACTAAGACGTGCCAAAGATCATTTTATTTTTACTATTGAATCAACTGGAGCATTGCCACCCGAGGTGCTATTTACTGAAGCTGTCAAGATTTTAGAAGACAAGTGTGAAAGGGTTATAACCGAGCTCTCATAG 1173 41.69 MPKVPLWDLPVLPQNSNNQLPLHLQLQKTRVSCNKDAPTHTEDIIYSGAYAALGVDNSLRLDEFRKNFKVNVIRLDKEDIEFDLIGIDASIANAFRRILISELPTMAIEKVLVANNTSVVQDEVLAHRLGLVPIKVDPRVFDYMSVNDVPNEKNTIVFKLHVKCDKKRGERLTVYSHDLKWLPSGSEFVLSTEKNASDSTSKPKTYTSFTSQQDFLQEFVIPVQDSLPKSVTPGQDISPTFVTHGIILSKLGPGQEIELEAHAIKGIGKTHAKWSPVATAWYRMLPEVVLLQDIEDEDAEKLVKKCPVNVFDIEDMGKGVKRATVARPRDCTLCRECIQEGWEEKVALRRAKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 390
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02664 390 Gene3D - 105 272 IPR036643 -
Cobi4g02664 390 CDD RNAP-I-II-AC40 68 388 IPR033901 GO:0001054(InterPro)|GO:0001056(InterPro)
Cobi4g02664 390 ProSitePatterns RNA polymerases D - 30 to 40 Kd subunits signature. 93 133 IPR001514 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cobi4g02664 390 Gene3D - 70 381 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Cobi4g02664 390 Pfam RNA polymerase Rpb3-RpoA insert domain 125 273 IPR011262 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cobi4g02664 390 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 233 276 IPR036643 -
Cobi4g02664 390 SMART rpoldneu2 79 388 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Cobi4g02664 390 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 104 189 IPR036643 -
Cobi4g02664 390 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 69 389 IPR022842 GO:0003899(InterPro)|GO:0006351(InterPro)
Cobi4g02664 390 Pfam RNA polymerase Rpb3-Rpb11 dimerisation domain 81 382 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Cobi4g02664 390 SUPERFAMILY RBP11-like subunits of RNA polymerase 66 389 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Cobi4g02664 390 PANTHER DNA-DIRECTED RNA POLYMERASE 25 390 IPR050518 GO:0001054(PANTHER)|GO:0001056(PANTHER)|GO:0003899(PANTHER)|GO:0005666(PANTHER)|GO:0005736(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02664 K03027 DNA-directed RNA polymerases I and III subunit RPAC1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:27008807 Cobi4g02664 Cobi-Chr4:71441799 dispersed