AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02679 ATGGGAAACCGAAAGGAGCGTAGACGTTCTGCCAAGGCTGGTGCCAATCGAAGAGTAAAACTCGATCTTCTACAGGAACCCTCTGGAGATTTTGGTGATTCGTCTAACCAAGATGAAGTTGGAGTTGGAGGCAATGGAAAAAATCAAGCTGGGTCACCCAGTTCACCATCATCTTCAGATCAAAGGCCAGAAAATCCTCTGTTACTGCTTGGACAATATAGCGATGAAGAAGTCGAGGAAGAATTGAGTAAAGAAGTAAACCGTGAAGTTAGAGAAAACACTCCAACTGTGCTGGATGAGCAGGTAAAGGTAAACAATCATGATAAAACAGAAGCAGATGTAGATCAAAACCTTTTTACTGAAAAAGTTGATCAAGAGAAAAAAGAACCATCTTCTTCAATGGATGTGCTGCCAAATTTAGAGAAATTTAGCGTTACAGAAGATGATAAATCTGAGCCTCTAAACAGAGATACAGATACAGTGGATGAGGCCTCTGTTTCTTTGAAATCTGATGTGCAGACACCAGGGGATGTGGATTCGGGCTGGAAAATGGTGTTGCATGAAGAAAGTAATTCATACTATTACTGGAACATTGTGACAGGTGAAACTTCTTGGGAAACTCCTAATGTTCTGACCCAAGGAAATGAATCAGCATATGATCCTAAATATGTGCCTCAAATTGAAGAAACGCATGCGACTTTTGTTGATACACAAGCTAATCATGAATCCACAAATGCTGTGGTTCTTGAGACCCAAGTGCAAAATGAAAACTATACAGATGTCATACCAAATGATAAAGATGAGGGCTTTGCAACACAATCTTGTGACGCTTCCAGTAATTTTGTAGTGCAGCATAATGATTATATTATTCAAGATATGGTTGGTGATGGTGGTGAATCTTCGGATTCTTTTCGTCTTCTGCAACTTTGTGAAAGTCTTTCAGAAAGATTAAAATCTTTGGAAGGGCCCGAAGGGTTCAGTGACCAGATACGAAAGTTGATGTTTGAACTTGATATAAGGCTTGCAGACATTAAGTCACTAGTACCATATGGATCATCATTGCTTCCTTTTTGGTTGCATTCTGAAAACCAGCTTAAGACTTTGGAATCTTCTATCAACAATGAAGTTCTAAAGCATTCACAACTCACAATTACTGGTGAAATTAACGAACCCAAAACCGGATTTCAAGAAAACAATGGTGAACACCATGAAAATGCAATTTTGGCAGAAATTAACCAAAATGTGGGCCACCACCCAGTGGAAGATGATGACATGGATGTCGAGATGGAAGTTGAAGATACCGCTACTGCAATTCATGCTCAAGATGAAGCGGGTGGCCAGAACGGGCCTCACCTTGATCCTCTGGAATCTGAACAAGAGTCTGGCGTTCCACTTCCTCCAAATGATGACTGGATTCCGCCGCCACCACCACCGGATGAGGAACCATTGCCACCTCCACCGCCAGACGAGCCACCTGAAATTCCGTTTCCACCACAAGCTTCAGATATACAGACAACGCAACCTTACTCTTATGGAGAACAATATAGTTATGCGTACCCAGGGTCTGGCTATGATTACTATGGACAAACAAACACTGAAATCCCAAGTAATGGTTATTATGTAGACGCTAATGGGTCTCATATAGCTGCTCCCCTCCCAACTGTTTATTATGCACCAGTAGTAAACCCAGAGCCCGTCACATATTACACTTCACCAGATGGGGCCATACCAACCGCACCAGTCACTAGTTCAGGTTTGCAGAATTCGGTTTATGAAAATCTTGTCTCTGGTCAAACCAAATCGTCTACAGTGGTTCCTTCTGTTTTGGCTTCTTCGCGTTTACCAGAAAGTTCTAGTGTAAAACGTGATGTTTCTGTGGTGTCGGCTCCATCTGTTGCTCCAACCGAAACAGCTACTAAGGCTCAACCGAAAGTTACGCGTATAAAAAAAAGAACTGTTGCAACGGTTCCAACTTTGAGGGCAAATAAGAAAGTTTCTGGCTTGGTGGATAAGTGGAAGGCTGTTAAAGAGGAATTGCATGAAGATGAAGAAGATGAACCTGAAAATGCATTAGAGTTTTTGGAAAAGAAACGGCAAAGAGAAATTGAGCAATGGCATGCTCAGCAGATTGCATCAGGAGAAGCCAAAGACAATGCCAACTTTCAGCCGCTTGGTGGTGATTGGCGGGAGAGAGTTAGGCGAAAGAGAGCTAAAAAATCAACACAAGCCGAAGAAGTTAAAGCTAAAGTCAGTGACGAATCAAAACAAAAGCCGGATCTCGCTGAACTTTCCAAACAACTCCCAACAGGATGGCAGGCATATTGGGATGAATCATCAAAGCAGGTGTATTATGGTAACTCGAAGACATCAGAGACAACATGGACTAAACCGACAAAGTAA 2400 42.12 MGNRKERRRSAKAGANRRVKLDLLQEPSGDFGDSSNQDEVGVGGNGKNQAGSPSSPSSSDQRPENPLLLLGQYSDEEVEEELSKEVNREVRENTPTVLDEQVKVNNHDKTEADVDQNLFTEKVDQEKKEPSSSMDVLPNLEKFSVTEDDKSEPLNRDTDTVDEASVSLKSDVQTPGDVDSGWKMVLHEESNSYYYWNIVTGETSWETPNVLTQGNESAYDPKYVPQIEETHATFVDTQANHESTNAVVLETQVQNENYTDVIPNDKDEGFATQSCDASSNFVVQHNDYIIQDMVGDGGESSDSFRLLQLCESLSERLKSLEGPEGFSDQIRKLMFELDIRLADIKSLVPYGSSLLPFWLHSENQLKTLESSINNEVLKHSQLTITGEINEPKTGFQENNGEHHENAILAEINQNVGHHPVEDDDMDVEMEVEDTATAIHAQDEAGGQNGPHLDPLESEQESGVPLPPNDDWIPPPPPPDEEPLPPPPPDEPPEIPFPPQASDIQTTQPYSYGEQYSYAYPGSGYDYYGQTNTEIPSNGYYVDANGSHIAAPLPTVYYAPVVNPEPVTYYTSPDGAIPTAPVTSSGLQNSVYENLVSGQTKSSTVVPSVLASSRLPESSSVKRDVSVVSAPSVAPTETATKAQPKVTRIKKRTVATVPTLRANKKVSGLVDKWKAVKEELHEDEEDEPENALEFLEKKRQREIEQWHAQQIASGEAKDNANFQPLGGDWRERVRRKRAKKSTQAEEVKAKVSDESKQKPDLAELSKQLPTGWQAYWDESSKQVYYGNSKTSETTWTKPTK 799
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02679 799 ProSiteProfiles WW-rsp5-WWP domain profile. 176 210 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 MobiDBLite consensus disorder prediction 1 164 - -
Cobi4g02679 799 ProSitePatterns WW-rsp5-WWP domain signature. 182 208 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 MobiDBLite consensus disorder prediction 440 505 - -
Cobi4g02679 799 Pfam WW domain 767 797 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 Pfam WW domain 180 208 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 ProSitePatterns WW-rsp5-WWP domain signature. 771 797 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 MobiDBLite consensus disorder prediction 142 164 - -
Cobi4g02679 799 MobiDBLite consensus disorder prediction 81 131 - -
Cobi4g02679 799 Gene3D - 760 799 - -
Cobi4g02679 799 MobiDBLite consensus disorder prediction 710 768 - -
Cobi4g02679 799 MobiDBLite consensus disorder prediction 467 498 - -
Cobi4g02679 799 ProSiteProfiles WW-rsp5-WWP domain profile. 765 799 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 MobiDBLite consensus disorder prediction 29 65 - -
Cobi4g02679 799 CDD WW 768 798 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 Gene3D - 174 221 - -
Cobi4g02679 799 SMART ww-5 177 210 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 SMART ww-5 766 799 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 SUPERFAMILY WW domain 170 210 IPR036020 GO:0005515(InterPro)
Cobi4g02679 799 PANTHER OS06G0298400 PROTEIN 300 381 - -
Cobi4g02679 799 MobiDBLite consensus disorder prediction 727 760 - -
Cobi4g02679 799 Coils Coil 729 749 - -
Cobi4g02679 799 CDD WW 180 208 IPR001202 GO:0005515(InterPro)
Cobi4g02679 799 SUPERFAMILY WW domain 766 798 IPR036020 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02679 K24774 formin-binding protein 4