AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02701 ATGGCTTCATCAGGCAATCATCAACAACCATTCGACATTCAACGATTATTCAACCCTCCACAAAACCCTAACATCTTCCCAATACCACCCTCTTCCGCCGCCTCTTACCCCCCTCCCACCGTCTTCCACCATTTCCCACCGCCTCCTAACCCTAACCAACCACCACCTTCCACTTTGCACCACCAGCTATCCCTGCCGTACCCTAGCATCCCCCTTAACCCTAACCCTAACCCTAACCATGGAGCTCGGTTAATGGCGTTATTAACCGCACCGCCACCGCCACTGCCACCGCCTTCTCCATCTCAATCTTCCATGCCTTTGCCGCCAATTCCTAATTTGAACACTAGTTCGGGGCCGGTTCGGATGCCGAGCAGTAAACTGCCTACGGGACGGCATTTGGTCGGTAATCGAGTGGTTTACGACATTGATGTTAGGTTGGATGGAGAGATTCAGCCTCAGCTTGAAGTTACGCCGATTACTAAGTACGGTTCGGATCCGCATTTGGTAGTGGGACGGCAGATTGCGGTTAATAAGAGTTATATATGTTATGGATTGAAAATCGGGACTATTAGGGTTCTTAATATTAACACTGCTTTGAGATCATTGTTTAAAGGTCTAGTTCAGAGGGTTACGGACATGTCTTTCTTTGCAGACGATGTTCATCTTCTTGCCAGTGCAAGCATGGGTGGAGGAGTTTATGTATGGAAGATTCTAGAAGGTCCTGATGAGGAAGATAAGCCACATATAACAGGAAAGATAGTTACTGCAGTTCAAATTCTAGGAGTTGGAGAATATGTTCATCCTAGGGTTTGTTGGCACTGCCATAAACAAGAAGTTCTTGTAGTCGGGATTGGGAATCGTATTCTTAGATTTGATACTACAAAGGTTGGGAGAGGTAAAGGATATTCAGCAGATGATCCTCTCATATGCCCTATTGATAAGTTGATTGATGGAGTTACTTTTGTTGGTAAGCATGATGGTGAAGTTACAGATCTATCCATGTGTCAATGGATGACTTCTCGTCTAGTTTCTGCTTCGGTGGACGGCACGATAAAGATTTGGGAAGATCGCAACACGTCACCTATTGCAGTACTGAGGCCACATGATGGCCTTCCTGTTAGTTCTGCCACGTTCTTAACTTCTCCACATCGCCCAGATCACATCATACTTATCACAGGGGGTCTGTTGAACCGTGAAGTGAAAATATGGGCCTCTGATAGTGAAGAAGGATGGTTACTTCCCAGTGATGCTGACTCATGGCGTTGTACTCAAACACTGGAGTTGAAAAGCTCTACTGAATCAAGACCCCAAGATGCGTTTTTTAATCAAGTAGTTGCTTTACCTCAATCGGGTCTTCTTTTACTAGCAAATGCCAGGAGAAATGCTATATATGCTGTACACTTGGATTATGGGCCCAATCCGGAAACAACCCGTTTGGACTACATTGCTGAGTTCAGTGTTACTATGCCAATATTGAGCTTTACTGGCACTAGTAATCCGTTACCAAATGGGTCTCACATCATTCAGGTTTACTGTGTTCAAACACAAGCCATTCAACAATATGCTCTAGACTTAACTCAATGCTTACCACCTCCTGTTTATGATGTGTTTGAGAAATCTGGTTCAACCGTGGATGCAACGGTTCTTGGTTTGGATGAGATGGCTCATGCTGATGTGGCACCAACATTGAGCCCTAGTGAGCTTAAGGATACCAATACCAATGTATCATATATTGTATCGCCAACGGTTCAATCTAGCCCTAAGTTGTCGGGAAAAGTTTCCGACTTTAGAAGTCCATCTGGCCGATTTGAGACGCGTCAGCAACTGAATGGTTATGATGATCAAAAAGTTATGGAGGAAAAACATTTGGAAACTGCTCGTTCAAATATGTCGAATGTTGCCTCATTGGATGATGATGATGATCATGATCGGACGGTCAAGTTTAAGCATCCAACTCATCTGGTAACTCCTGCTGAGTTGATGACCATGTCATCCTCTGAAGTAAATTATGTTGATGGTTTGCATGATGTGGCGGTCAACTCTGATACACAGAATGCTGAGGTGGAGGTCAAGGTTGTGGGTGAGCTTAATGGTTCTGCGTATGAAGAAAAGGAAAGATCTAGAACTTTCTCATCACAGGCATTAGGGCTAGGGCTTGATATGGCACCTGATAATGAGTCTAAACAATTGGATCAAATTGCAGATACTCAGGATGAAGTTGATGATGTGGCAACTGACCTAGCTGGATCTGTTGAGATGTTTGTGCCTGGTGTAGTTCAATCAGCGGGCCCCACTTCACGAGAAAAGAAGAAGAAAAAGAATGCTCAAGTATCAGGTCAAACTTCAAGTGCCTCAAAGTCAACTAATTCTTATGATGAGCTTGGAGTGAGTTCCAGTATACTTTCACAAATCCAGTCCATGCAAAAAACACTTAATCAGATTTTAATCAATCAAAAGGAAATTCAGAAGCAGGTTCCAGTGATTACTGCAGTACCAATAACAAAAGAAGGCAAAAGGATAGAATCAGCCATTGGTAAAAGCATGGAGAAAATTCATAAAGCCAATTCTGATGCTTATTGGGCTCGTTTACAAGAAGAGTTTGCAAAACAAGAAAAGTCAAACAAAGACCACCATCAACAAATATTAAGTTCCGCCAGTCACAAAGAATTTCTTGTAGCGTCAGAGAAAATGCTCAAGAAAGAAATGGCTGCAGCGGTGCCAGTTGTCGGACGCTCGGTAATTCCAATTATTGAGAAATCAGTCTCGACAGCTGTCACAGAGGCCTTCCAGAGGGGTATAGGTGATAAAGCTGTTAACCAAATGGATAAAGCGGTGAATTCCAAACTGGAGGCTACTGTATCTAGGCAAATTCAAACTCAATTTCAAACTTCTGGCAAACAAGCTCTACAGGAAGCACTTAGGTCAAGTATGGAGGCTTCTGTTGTTCCCGCCTTTGAGATGTCTTGCAAGTCAATGTTTGACCAAGTTGACTCCACATTCCACAAGGGAATGATGGAACACACAACTGCAGTTCAGCAGCAAGTGGAGTCTATGCATTCTCCTTTGGCATTTACTTTGAGGGATACTATCAATTCAGCGTCATCTTTAAGTCAAACATTGACTAGTGAATTTGCTGATGGTCAAAGGAAGTTAATGACTCTCGCGGTTACTGGATCAAATTCTAAATCAGCAAATCCATTAATAAGCCAATTAAGTAATGGGCCTTCAGGCCTTTTCCATGAAAAGATTGAAGCACCAGTGGACCCCACAAAAGAGCTATCTAGGTTAGCATATGAGCACAAATTTGAGGAGGCCTTTACTGCTGCCTTGCAAAGAAGTGATGTTCGCATTGTTTCCTGGTTATGCTCTCAGGTTGATCTACAGGGGATATTAACGAGTAATCCTGTTCCTCTGAGCCAAGGGGTACTACTGTCATTATTGCAGCAATTGGCGTGTGATATTGCTAACGATACCTCTAGGAAGCTTAATTGGATGATGGATGTGGTGGTGGCGATCAAACCAACGGACGGGATCATTGCATTACATGTGAAACCCATATTTGAACAGGTGGACTCGATTCTAAACCATCAGATGAGTGTTCCCACAACTTCAGTAGCTGAGCTTTCCAGTATTCGTGTGGTTATGACACTTGTGAACTCGACGTTAAGGAGCTTGTAA 3678 43.42 MASSGNHQQPFDIQRLFNPPQNPNIFPIPPSSAASYPPPTVFHHFPPPPNPNQPPPSTLHHQLSLPYPSIPLNPNPNPNHGARLMALLTAPPPPLPPPSPSQSSMPLPPIPNLNTSSGPVRMPSSKLPTGRHLVGNRVVYDIDVRLDGEIQPQLEVTPITKYGSDPHLVVGRQIAVNKSYICYGLKIGTIRVLNINTALRSLFKGLVQRVTDMSFFADDVHLLASASMGGGVYVWKILEGPDEEDKPHITGKIVTAVQILGVGEYVHPRVCWHCHKQEVLVVGIGNRILRFDTTKVGRGKGYSADDPLICPIDKLIDGVTFVGKHDGEVTDLSMCQWMTSRLVSASVDGTIKIWEDRNTSPIAVLRPHDGLPVSSATFLTSPHRPDHIILITGGLLNREVKIWASDSEEGWLLPSDADSWRCTQTLELKSSTESRPQDAFFNQVVALPQSGLLLLANARRNAIYAVHLDYGPNPETTRLDYIAEFSVTMPILSFTGTSNPLPNGSHIIQVYCVQTQAIQQYALDLTQCLPPPVYDVFEKSGSTVDATVLGLDEMAHADVAPTLSPSELKDTNTNVSYIVSPTVQSSPKLSGKVSDFRSPSGRFETRQQLNGYDDQKVMEEKHLETARSNMSNVASLDDDDDHDRTVKFKHPTHLVTPAELMTMSSSEVNYVDGLHDVAVNSDTQNAEVEVKVVGELNGSAYEEKERSRTFSSQALGLGLDMAPDNESKQLDQIADTQDEVDDVATDLAGSVEMFVPGVVQSAGPTSREKKKKKNAQVSGQTSSASKSTNSYDELGVSSSILSQIQSMQKTLNQILINQKEIQKQVPVITAVPITKEGKRIESAIGKSMEKIHKANSDAYWARLQEEFAKQEKSNKDHHQQILSSASHKEFLVASEKMLKKEMAAAVPVVGRSVIPIIEKSVSTAVTEAFQRGIGDKAVNQMDKAVNSKLEATVSRQIQTQFQTSGKQALQEALRSSMEASVVPAFEMSCKSMFDQVDSTFHKGMMEHTTAVQQQVESMHSPLAFTLRDTINSASSLSQTLTSEFADGQRKLMTLAVTGSNSKSANPLISQLSNGPSGLFHEKIEAPVDPTKELSRLAYEHKFEEAFTAALQRSDVRIVSWLCSQVDLQGILTSNPVPLSQGVLLSLLQQLACDIANDTSRKLNWMMDVVVAIKPTDGIIALHVKPIFEQVDSILNHQMSVPTTSVAELSSIRVVMTLVNSTLRSL 1225
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 1 21 - -
Cobi4g02701 1225 SUPERFAMILY WD40 repeat-like 177 468 IPR036322 GO:0005515(InterPro)
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 776 791 - -
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 89 107 - -
Cobi4g02701 1225 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 156 239 IPR032401 -
Cobi4g02701 1225 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 1 1224 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Cobi4g02701 1225 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 364 IPR001680 GO:0005515(InterPro)
Cobi4g02701 1225 Coils Coil 804 824 - -
Cobi4g02701 1225 Gene3D - 1138 1224 IPR044938 -
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 22 56 - -
Cobi4g02701 1225 SMART WD40-4 358 404 IPR001680 GO:0005515(InterPro)
Cobi4g02701 1225 SMART WD40-4 316 355 IPR001680 GO:0005515(InterPro)
Cobi4g02701 1225 SMART WD40-4 196 236 IPR001680 GO:0005515(InterPro)
Cobi4g02701 1225 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1096 1201 IPR049404 -
Cobi4g02701 1225 FunFam Enhancer of mRNA-decapping protein 4 1138 1224 - -
Cobi4g02701 1225 Gene3D - 148 464 IPR015943 GO:0005515(InterPro)
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 760 791 - -
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 88 109 - -
Cobi4g02701 1225 MobiDBLite consensus disorder prediction 1 60 - -
Cobi4g02701 1225 Pfam WD domain, G-beta repeat 325 354 IPR001680 GO:0005515(InterPro)
Cobi4g02701 1225 FunFam enhancer of mRNA-decapping protein 4 155 469 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02701 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
71760 Cobi3g00796 Cobi4g02701
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr12:22827326 Cobi4g02701 Cobi-Chr4:72891879 dispersed
Cobi Cobi-Chr3:14435751 Cobi4g02701 Cobi-Chr4:72891879 dispersed
Cobi Cobi-Chr3:9268693 Cobi4g02701 Cobi-Chr4:72891879 wgd