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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02761 ATGATTGATCACGGAAACAATAATGTATACGGAATGAGTCCAATGGAACATCCATCGGTCGATAACCGGCTCCCGCTTTCGAGGAAACGATCTCGGGATTTGTGCTCGTTCGATGATCCGTCGTTTCCGAATAATCAATTCGGTTATAAGAATGAAATCATTAACCGGAATGGGATCTTCACGTTTCTGGGGCATGATATCTCCATGCAGATCTATCAACAACAACTTGAAATCGATCACTTCATTTCTCAACATACAGAGAAGATGAGATGTGACATCGAATCAATTCAAAGAACAAACTCGAGCCGACTGATCGCAGTCGCAGAGGAAGGACTAAAGCGACTGCGATCAAAAGACGAGGAAATAACAAGCATCCGAAGATTAAACTACGCGTTATCCGAGAAGGTGAAGTCACTCACATTAGACAACCAAATGTGGCAACAAGAAGCACAATCAAACGAAGCAACGGCTAAGGTTCTCCAACATAACATCCAACAAGTTCTAACACAAAGTGTTGTTGATGACGTGGAATCATGTTGCGAGAGTAACGTTGAACAAGGGCGTAGGTTAGCAGAAGGTGGTGATGATGTGGAGGCGTACGGTAGAAGGTGGTGCAGAAATTGTGGGAAAGGTGAGTTGTGTGTGTTGGTGTTACCTTGTAGACATCTGTGTGTGTGTAGTGTGTGTGAATCCTCAATCAATGTCTGTCCCATCTGTAAATCCACAAAAAATGGCAGTGTGCATGTTAATATGAATGCATTTTGA 765 43.01 MIDHGNNNVYGMSPMEHPSVDNRLPLSRKRSRDLCSFDDPSFPNNQFGYKNEIINRNGIFTFLGHDISMQIYQQQLEIDHFISQHTEKMRCDIESIQRTNSSRLIAVAEEGLKRLRSKDEEITSIRRLNYALSEKVKSLTLDNQMWQQEAQSNEATAKVLQHNIQQVLTQSVVDDVESCCESNVEQGRRLAEGGDDVEAYGRRWCRNCGKGELCVLVLPCRHLCVCSVCESSINVCPICKSTKNGSVHVNMNAF 254
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02761 254 CDD mRING-HC-C3HC5-CGRF1-like 205 240 - -
Cobi4g02761 254 MobiDBLite consensus disorder prediction 1 23 - -
Cobi4g02761 254 ProSiteProfiles Zinc finger RING-type profile. 205 240 IPR001841 -
Cobi4g02761 254 Gene3D Death Domain, Fas 88 213 IPR011029 -
Cobi4g02761 254 Gene3D - 214 248 - -
Cobi4g02761 254 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 27 251 - GO:0004842(PANTHER)|GO:0043067(PANTHER)
Cobi4g02761 254 Pfam Zinc finger, C3HC4 type (RING finger) 204 243 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02761 K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71750 Cobi3g00764 Cobi4g02761
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:74884926 Cobi6g02032 Cobi-Chr6:16418167 dispersed
Cobi Cobi-Chr4:74884926 Cobi4g02762 Cobi-Chr4:74907200 tandem
Cobi Cobi-Chr12:22369369 Cobi4g02761 Cobi-Chr4:74884926 wgd
Cobi Cobi-Chr3:8793025 Cobi4g02761 Cobi-Chr4:74884926 wgd