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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02809 ATGAATAGTAATCCTTCAACGCCGATGAACGCACACGCTCCGTCGTCAAGCTCCGGTGGCGCCGGGTCACCGGATTCAAATACTCCGAGGAGAAATTCGAAGCGACCTAAATATTCTAGGTTTACACAGCAAGAACTCCCAGCTTGCAAGCCAATCCTTACGCCAAAATGGGTGATTTCAGCATTCATGCTTGTGACAATTGTCTTCATACCTATAGGACTTACTTCCCTCCTTGCTTCTAATGATGTAATTGAAATTGTTGACCGCTACGATAATGCCTGCTTAACAGGCACAAAAAGTCAAAAGGTCCAATATATACAAAATTCCACCTCAGATAAAACCTGCACCAGAACCTTGACAGTCAAAAAGAGAATGAAGCAGCCTATATATGTCTATTATCAGCTCGACAATTTCTATCAGAATCATCGCAGGTATGTCAAGAGCCGAAGTGATACGCAACTGAGAAACCTTGGTGATGAGAACGACACAAGTACATGTAAGCCTGAAAATGAAGCAAATGGGATGTCAATAGTGCCATGTGGACTTGTGGCCTGGAGTTTGTTCAATGACACATATACTCTCTCCACTCGTAGCAACCGGTCATTAACCATAAACAAGCGGGAAATTTCATGGAAGAGTGACAGAGATGAAAAGTTTGGTAGTGATGTCTTCCCAAAAAATTTCCAAAACAGTAGCTTTATTGGTGGTGGAAGTCTCAATTCGTCTATCCCATTAAATCAACAAGAAGATCTTATTGTTTGGATGCGAACTGCTGCGCTTCCAACGTTTAGGAAACTTTATGGGAAAATTGAGCAGGATATTGAGGCTGGTGAAACAATAACTGTGGTATTGCAGAACCGTTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTTTCAACTACCAGCTGGCTTGGTGGGAAAAATAACTTTATTGGCATTGCTTATCTGGCAGTTGGTGGCTTGTGCTTTTTACTAGCTACCACTTTCACTATCATATATTTTGTTAAGCCAAGGCATCTTGGAGATCCGAATTATTTGTCATGGAACCGGAACCCAGGTGGTCACTAA 1077 41.97 MNSNPSTPMNAHAPSSSSGGAGSPDSNTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLTSLLASNDVIEIVDRYDNACLTGTKSQKVQYIQNSTSDKTCTRTLTVKKRMKQPIYVYYQLDNFYQNHRRYVKSRSDTQLRNLGDENDTSTCKPENEANGMSIVPCGLVAWSLFNDTYTLSTRSNRSLTINKREISWKSDRDEKFGSDVFPKNFQNSSFIGGGSLNSSIPLNQQEDLIVWMRTAALPTFRKLYGKIEQDIEAGETITVVLQNRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTIIYFVKPRHLGDPNYLSWNRNPGGH 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02809 358 MobiDBLite consensus disorder prediction 1 29 - -
Cobi4g02809 358 PIRSF Lem3-Cdc50 7 354 IPR005045 GO:0016020(InterPro)
Cobi4g02809 358 PANTHER CELL CYCLE CONTROL PROTEIN 50 29 350 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Cobi4g02809 358 MobiDBLite consensus disorder prediction 1 40 - -
Cobi4g02809 358 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 77 341 IPR005045 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02809 K26935 cell cycle control protein 50
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Event-related genes

Select Gene_1 Gene_2 Event_name
71745 Cobi3g00743 Cobi4g02809
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:75739550 Cobi8g00945 Cobi-Chr8:54691409 dispersed
Cobi Cobi-Chr9:49170737 Cobi4g02809 Cobi-Chr4:75739550 transposed
Cobi Cobi-Chr12:22125349 Cobi4g02809 Cobi-Chr4:75739550 wgd
Cobi Cobi-Chr3:8495308 Cobi4g02809 Cobi-Chr4:75739550 wgd