AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi4g02810 | ATGGAAGTCAACTCAGGATTCATATACTCCGCAATCAAGATGAGCATGGAAACAGAAAACGTCGTCGCTCGCCTCAAGAGTTCTGGATTGTTTCGAACCAAAGGTCTTATAGGAGGGAAATGGATTGATGCATACGATGGGAAGACCATCGAGGTTTACAACCCTGCGAATGGGGAAGTTATAGCTTCGGTTGTGTGCATGGGCGAGAGGGAAACAAAAGATGCAATTTCTTCGGCCTACCATGCTTTTACCCATTGGAGTAAGCTTACTGCTGCTGAGAGGAGTACTCGCCTGCGTAAATGGCATAACTTATTGATTGAACACAAAGAAGAGCTTGGACATATAATAACTTTGGAACAAGGCAAACCTCTAAAAGAAGCCATCGCAGAGGTTGTATCTGGGGCGGGTCACGTTGAGTTCTTTGCAGAGGAAGCTAAACGTGTTTACGGTGATATAATTCCATCACCACAGCCTGACCGTCGCCTATTTGTCCTAAAGCAGCCTGTCGGTGTAGTTGGCGCGATCACTCCATGGAATTTCCCCTTCGCGATGATTACCAGGAAGGTTGCACCTGCTCTTGCTTGTGGGTGTACTGTGGTCATAAAACCCTCTGAGCTCACACCGTTGACCGCCTTAGCAGCAGCTGAGCTGGCACTTCAATCTGGAATCCCGCCTGGTGTCTTGAACGTGGTAATCGGCGATGCTCCTAAAATTGGAAATGCTTTGCTTGAAAGCCCACAAGTAAGAAAGATCACGTTTACCGGTTCAACAGCCGTTGGAAAGAAACTAATGGCTGGTGCAGCTGACACGGTTAAAAAGATATCTCTTGAACTTGGTGGTAATGCCCCATTCATAATCTTCGATGATGCTGACCTGGAAGCGGTACTGAAAGCAAGCGTGGCAACTAAATTCTTTAACACTGGACAAACATGTATATGCGCGAATAGATTGCTTGTGCAAGAAGGCATATATGACAAATTTATAAATGCCTTCTCAAATGCTGTTGAGAGCCTTAAAGTTGGCAATGGTTTTAGTGAAGGTGTGACACAGGGACCACTTATCAATGAAGCTGCTGTACAGAAAGTTGAATCATTAGTGCAGGATGCTATCTCAAAGGGAGCAAAAGTTGTATTGGGTGGTAAGAGGCATAAGCTAGGGTTTACTTTTTATGAGCCTACCATTATAACTGATGTCAACAATCAGATGCTTATAGCAAGGCAGGAAATATTTGGACCTGTTACGCCTATTATACGGTTTAAAACAGAAGAAGAAGCTATACAAATTGCTAATGACACTGAATCAGGATTAGCCGCTTACTTGTTCACAAACAATATTAAGCGTTCATGGCGTGTGTGTGAAGCTCTTGAATACGGCATTGTTGGAGTAAACGAGGGGGTGTTTGCTTCAGCGGTAGCGCTGTTTGGAGGTTTTAAGCAGTCTGGTTTAGGACGCGAAAGTTCAAAATATGGATTAGATGAGTATCTTGAAATCAAGTGCGTTTGTATGGGAAACATGGGCTGA | 1521 | 44.25 | MEVNSGFIYSAIKMSMETENVVARLKSSGLFRTKGLIGGKWIDAYDGKTIEVYNPANGEVIASVVCMGERETKDAISSAYHAFTHWSKLTAAERSTRLRKWHNLLIEHKEELGHIITLEQGKPLKEAIAEVVSGAGHVEFFAEEAKRVYGDIIPSPQPDRRLFVLKQPVGVVGAITPWNFPFAMITRKVAPALACGCTVVIKPSELTPLTALAAAELALQSGIPPGVLNVVIGDAPKIGNALLESPQVRKITFTGSTAVGKKLMAGAADTVKKISLELGGNAPFIIFDDADLEAVLKASVATKFFNTGQTCICANRLLVQEGIYDKFINAFSNAVESLKVGNGFSEGVTQGPLINEAAVQKVESLVQDAISKGAKVVLGGKRHKLGFTFYEPTIITDVNNQMLIARQEIFGPVTPIIRFKTEEEAIQIANDTESGLAAYLFTNNIKRSWRVCEALEYGIVGVNEGVFASAVALFGGFKQSGLGRESSKYGLDEYLEIKCVCMGNMG | 506 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi4g02810 | 506 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 276 | 283 | IPR029510 | GO:0016491(InterPro) | |
| Cobi4g02810 | 506 | SUPERFAMILY | ALDH-like | 28 | 504 | IPR016161 | GO:0016491(InterPro) | |
| Cobi4g02810 | 506 | CDD | ALDH-F5-SSADH-GabD | 52 | 502 | - | - | |
| Cobi4g02810 | 506 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 24 | 505 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Cobi4g02810 | 506 | FunFam | Succinate-semialdehyde dehydrogenase I | 280 | 469 | - | - | |
| Cobi4g02810 | 506 | FunFam | Succinate-semialdehyde dehydrogenase I | 47 | 292 | - | - | |
| Cobi4g02810 | 506 | Pfam | Aldehyde dehydrogenase family | 41 | 500 | IPR015590 | GO:0016491(InterPro) | |
| Cobi4g02810 | 506 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 47 | 494 | IPR016162 | GO:0016491(InterPro) | |
| Cobi4g02810 | 506 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 280 | 469 | IPR016163 | GO:0016620(InterPro) | |
| Cobi4g02810 | 506 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 304 | 315 | IPR016160 | GO:0016491(InterPro) | |
| Cobi4g02810 | 506 | NCBIfam | succinate-semialdehyde dehydrogenase | 52 | 498 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi4g02810 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Cobi4g02810 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cobi | Cobi-Chr4:75764094 | Cobi4g02812 | Cobi-Chr4:75872363 | dispersed | |
| Cobi | Cobi-Chr4:75764094 | Cobi4g02811 | Cobi-Chr4:75838248 | tandem | |
| Cobi | Cobi-Chr6:74784037 | Cobi4g02810 | Cobi-Chr4:75764094 | transposed | |
| Cobi | Cobi-Chr4:75764094 | Cobi6g01445 | Cobi-Chr6:11657994 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cobi3g00439 | . | 8 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 85.89 | 0.0 | 891.0 | |
| Cobi1g04262 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 77.122 | 0.0 | 882.0 | |
| Cobi1g04263 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 75.741 | 0.0 | 867.0 | |
| Cobi1g04264 | ACH,WGDA | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 73.889 | 0.0 | 828.0 | |
| Cobi1g04283 | ACH | 1 | 500 | Aldehyde Dehydrogenase gene family | AT1G74920 | 80.0 | 0.0 | 868.0 | |
| Cobi1g04320 | ACH | 15 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 76.095 | 0.0 | 897.0 | |
| Cobi2g02942 | ACH | 1 | 502 | Aldehyde Dehydrogenase gene family | AT3G48170 | 78.287 | 0.0 | 844.0 | |
| Cobi2g02567 | . | 9 | 484 | Aldehyde Dehydrogenase gene family | AT1G44170 | 65.966 | 0.0 | 675.0 | |
| Cobi11g01555 | ACH | 4 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 78.662 | 0.0 | 942.0 | |
| Cobi6g02325 | . | 4 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 60.291 | 0.0 | 613.0 | |
| Cobi6g02042 | ACH,WGDA | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 78.967 | 0.0 | 899.0 | |
| Cobi6g01445 | WGDA | 21 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 75.244 | 0.0 | 792.0 | |
| Cobi12g00899 | ACH | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 51.458 | 0.0 | 519.0 | |
| Cobi6g01136 | . | 86 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 81.992 | 0.0 | 889.0 | |
| Cobi3g03581 | WGDA | 3 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 63.928 | 0.0 | 682.0 | |
| Cobi9g03097 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 78.108 | 0.0 | 888.0 | |
| Cobi1g00452 | WGDA | 2 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 89.293 | 0.0 | 933.0 | |
| Cobi1g00450 | WGDA | 2 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 89.293 | 0.0 | 933.0 | |
| Cobi9g02985 | ACH | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 55.487 | 0.0 | 568.0 | |
| Cobi7g01955 | WGDA | 1 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 66.467 | 0.0 | 700.0 | |
| Cobi7g00545 | . | 84 | 602 | Aldehyde Dehydrogenase gene family | AT2G14170 | 67.946 | 0.0 | 746.0 | |
| Cobi6g03846 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 80.55 | 0.0 | 926.0 | |
| Cobi4g02812 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 72.764 | 0.0 | 748.0 | |
| Cobi4g02811 | WGDA | 150 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 65.957 | 2.18e-173 | 491.0 | |
| Cobi4g02810 | . | 33 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 73.022 | 0.0 | 752.0 |