AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02819 ATGCCAGATCATCACCTACATCCATACTTCAGATATCTGGTTGACAACCAGGATCTCTTACATTCAAAAGACAACGGGCAGCCTGAAAATGAGGAGAAAATATCTAATACTGGAGCATTGTCTTTACTTGGTTCTGTGTATGGCACTGGTGAGGATGATGATGGTGGAACAGATCATCCATCATCATCATTTAAAAAAAGTGTATCTGGGAACACTGTGAATGCAGATTCTACCATTCCTTCTGCAGCAGTGAAAACCGTGTTGTCATCTGACAAAGATGAGCCTGTTATAAAAAAGACTTCTTTGTCAAATGCACTGAAAGAGAGAAGAACTAGTAGTGTTAAGAAAGACGAGTTTTTGGGTTCACTATCTTCTGTACCAGATAAGTCACGGGCTTCTTCTCTACCTCCAATTCCCAAAGCTGAGCTCTTGTTTGTGGACCCACCATCTGAAATGAAACGGTTGGTTGACAAGATAGTTGAATTCATCATGAAAAATGGGAGGCAGTTTGAGGCCGTACTCATGGAACAAGACCGTGGTCATGGAAGATTCCCGTTTCTAATCCCATCTAATATATTCCATCCATATTACCTGAAAGTTCTACAGAAAGCCCAAGAGTCGAAGCTAACTGTCAAAAGTTACAATGAGAAAGAAGATTTCAGAGGACATATCTCAAACAAGAAAAAGTCTATCTCAAGGGAGAATGAGAATGATATAACGGAATCCGATGATATACCACTTGATTCTGAAAGAAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAAAAAGAAGGATCAGACATGCCTGACAAGTCCACACAATCACCACCTCGAGTCCAGGTGGATGCTGACCAAGCAGCAGCAATTCTTCAAGCTGCTACCAGAGGCATTAAACCTTCCAATTTAGGATTTCTGTATGGGCAACCATCCAATGAAGACGGTTCCTCTGAGTCACACTTGACTCATGAGCAGAAGCTAAAGGCTGAGAGACTTAAACGGGCCAAGATGTTCGTGGCTCAGCTGAAAAGTGGAGCAGCTCCATTAAAAGCCGGACCCTCACGTGGCTCATCAGCTGAGCCACAAACTGACAACCGCCTTGTAGCCAAAGAAACCGAGAAGAACACACTCCCTTCAGATGTTGGTACTTCAGATAATAAATCAAAATCAGAAAAACAACATTTAAACGAAGAAAGACGAGCGATGAGAAAATACCGAGCTCGTTCTACAAAAGACAAAAAAGATTACCATGATGACGACGATGACGATGATGAGAGAGCAATGAGAAAATACCGAGCTCGTTCTACAAAAGACAAAAAAGATGACCATGACGATGACGACGATGACGATGATGAGAGAGAAATGTCACATAGACACCATAGTAAGAAACATCGATATCGTAATCATTCAGTTGAAGATGAGAGAAAAGAAAAACATGCAGATGAGAGAGATTACAAACATACCAAAAGACAACATCGCTCTCATCGTTCTTCCCATAAACATGATGATGACATGGACAGAATCACTGAAGAAAAGGATCAAAAGTATTCAAAGAAAAAGAAGCATCGATCTTCTAGCTCTTATGAAGACGATGAACAAGAAAGTGAACACGAACGCTCTAGAAAGAAACACCGTTCTCATGTAGATGAACAAGAAAGTGAACATTCTAGAAAGAAACACCGATATGAAGACGAACAAGAGAGTGAACATGAATATTCTAGAAAGAAACATCGATCTCACCATTCTTCAGATGATGAAGATGACAGTGACGATAAACATTCTAGAAGAAAACATAAACATAGATCTCACAAATCTTCTCATGGTCATAAGCATAGGAAAAGTCACTCTTCTAGGCATAAAGAGAAGCACAATGAGTCTTCAGAAGAGGAGTCGAGGGACCAAAATAAGGCTGATAAGAATGTTAAGGGACCAAACTCGGAAAGAGAAGAACTTGAAGAAGGAGAGATAACGGGTCCGTCAAAAGGAGTATCTTTGGTTAATGGAGCTACTAGAGAGCCTTCAGTTGATGCATCAAGTTCTTTACAAGATTCGAGACCGCTGACTCAGCCATCCACGACAACCGAGGTTTCTGATGATCTCAGGGCCAAAATCAGAGCAATGCTGATGTCAACAATGTAA 2139 40.63 MPDHHLHPYFRYLVDNQDLLHSKDNGQPENEEKISNTGALSLLGSVYGTGEDDDGGTDHPSSSFKKSVSGNTVNADSTIPSAAVKTVLSSDKDEPVIKKTSLSNALKERRTSSVKKDEFLGSLSSVPDKSRASSLPPIPKAELLFVDPPSEMKRLVDKIVEFIMKNGRQFEAVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQESKLTVKSYNEKEDFRGHISNKKKSISRENENDITESDDIPLDSERKEKFKMVINKSKKEGSDMPDKSTQSPPRVQVDADQAAAILQAATRGIKPSNLGFLYGQPSNEDGSSESHLTHEQKLKAERLKRAKMFVAQLKSGAAPLKAGPSRGSSAEPQTDNRLVAKETEKNTLPSDVGTSDNKSKSEKQHLNEERRAMRKYRARSTKDKKDYHDDDDDDDERAMRKYRARSTKDKKDDHDDDDDDDDEREMSHRHHSKKHRYRNHSVEDERKEKHADERDYKHTKRQHRSHRSSHKHDDDMDRITEEKDQKYSKKKKHRSSSSYEDDEQESEHERSRKKHRSHVDEQESEHSRKKHRYEDEQESEHEYSRKKHRSHHSSDDEDDSDDKHSRRKHKHRSHKSSHGHKHRKSHSSRHKEKHNESSEEESRDQNKADKNVKGPNSEREELEEGEITGPSKGVSLVNGATREPSVDASSSLQDSRPLTQPSTTTEVSDDLRAKIRAMLMSTM 712
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02819 712 MobiDBLite consensus disorder prediction 595 619 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 61 76 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 20 76 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 497 594 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 671 697 - -
Cobi4g02819 712 Pfam Surp module 153 202 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cobi4g02819 712 Coils Coil 548 568 - -
Cobi4g02819 712 Gene3D Surp module 142 210 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cobi4g02819 712 MobiDBLite consensus disorder prediction 261 280 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 467 488 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 385 417 - -
Cobi4g02819 712 SMART surpneu2 153 206 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cobi4g02819 712 SUPERFAMILY Surp module (SWAP domain) 128 202 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cobi4g02819 712 MobiDBLite consensus disorder prediction 620 656 - -
Cobi4g02819 712 ProSiteProfiles SURP motif repeat profile. 155 197 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cobi4g02819 712 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 1 525 IPR040397 GO:0000395(PANTHER)
Cobi4g02819 712 MobiDBLite consensus disorder prediction 225 253 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 423 442 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 344 699 - -
Cobi4g02819 712 MobiDBLite consensus disorder prediction 300 325 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02819 - -