AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02833 ATGAGAGTTCAATTCACTCGTAACTTAACCCTAGCCTTCGATTTCCGCAAATCCGCCCTTTATTCTTCTTCTTCCGCATCAATTCACCGTCTTAATCAATCTCGCGTGACTATGGGTTCTCAATCGGCGGTTGAGGTGGAGTGGCCGGCGAACAGAGTTAGGGATTCGTTTATTAAGTTCTTCGAGCAACGGAATCACGTTTATTGGAAATCAAGCCCCGTTGTTCCAGTCAATGATCCCACTCTTCTCTTTGCTAATGCCGGAATGAATCAGTTCAAGCCTATATTCTTGGGGACTGTTGACCCAAACACTTCTTTGAGCAAATTGACCCGTGCCTGCAACACCCAGAAATGCATCCGTGCTGGCGGCAAACATAATGATCTTGATGATGTTGGCAAAGATACTTATCATCACACGTTCTTTGAAATGCTTGGAAATTGGTCATTTGGTGATTATTTCAAAGAGGAAGCCATTGGTTGGGCTTGGGAACTTCTCACAGTGGTTTATAAGCTACCTACTGATAGGATATATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCTGCTGATACTGAAGCTAAAGATATATGGCTTAAATATTTACCATCTGCAAGAGTTTTGCCCTTTGGTTGTAAAGACAATTTCTGGGAGATGGGTGACACTGGACCTTGTGGGCCCTGTACTGAAATACACTTTGATAGAATTGGCGGCCGTGACGCAGCTGAGTTGGTTAATAATGATGACCCTACATTGATTGAAATATGGAATAATGTGTTTATTCAGTTTAACCGGGAAGCTGATGGTTCCTTAAAACCTCTGCCCGCCAAACACGTGGATACTGGAATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAATTAAGTAACTACGACACAGATGTTTTCATACCTATTTTTGATGCTATCCAACAGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTGGATGGAATTGACATGGCCTACCGAGTTGTTGCTGACCACATCAGAACTCTTTCATTTGCCATTGCAGACGGTTCTCAACCAGGAAATGAAGGGCGTGAATATGTTTTGAGGCGCATTCTTCGCCGTGCTGTACGTTATGGAACCGAAGTATTGAAAGCACAACAAGGATTTTTTCATGGATTGGTGAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAGCTAAAAGAACGAGAGGCACACATTAGAGATATTATAGCTGAAGAGGAAGCAAGTTTTGGAAGAACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACGGCTCAAGATGTTAAGGGGAAGATATTTAGTGGACATGATGCCTTTGTTCTATGGGATACTTATGGATTCCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAGGATTGGTAGTTGATGTTGAGGGCTTTAATGTTGCAATGAATGAAGCTCGAGAAAGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTTACAATTGTCATGGATGCAGATGCCACTTCAGCACTGCATAAGAGAGGGGTGGCAACAACAGATGATAGTTTTAAGTTCATATGGGATAAGGAGCACAAAAGTGTGATAAAAGCCATTTACACAGGCTCCGAGTATGTAGACCGTGCTGATGCTGGCGATGATGTCGGCATAATTCTTGAAAGCACAAGTTTCTATGCTGAACAAGGTGGTCAGATATTTGATACTGGACGGATTGGAGGCAAATCTGGATCTTTTGAAGTCTGTAATGTTCAAATTTATGGTGGGTTTGTGCTTCATCTTGGTAAAATTAGTGAGTCGGCCCAATTCCATGTGGGTGATGAAGTAATTTGTCAGGTGAACTATGAAAGGCGTCGAGAAGTTGCTCCAAATCATACATGTACACACATGCTAAATTTTGCTCTTCGGGAAGTGCTCGGGACTCATGTGGACCAAAAAGGATCCATTGTTCTTCCAGAAAAACTAAGGTTCGACTTCTCGCACGGGAAGCCCGTTAAGCCCGAAGACCTTCGAAAAATCGAATCAATTGTGAATGAACAAATTAAAGCTGAGCTAGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAACGAGTGAACGGTTTGCGTGCTGTTTTTGGTGAAGTGTATCCGGATCCAGTTAGGATTGTTGCCATTGGTCGAAAAGTGGACGAGTTATTGGCTGATCCTGAAAATAAAGAATGGACGTCCATATCTGCTGAACTTTGTGGCGGGACTCATATCTCAAATACACGAGATGCGAAAGCTTTTGCTCTTTTGTCTGAGGAAGGAATTGCTAAAGGGATTAGAAGAGTTACTGCTGTAACAACTAAATATGCTTTTGATGCTCTTGACGCGGCAACTAAGCTTCAGGAGGAAGTTGACATGGCATCTAAGCTTGAAGGAAGCTTCCTTGAACAGAAAGTGACATTTTTAAATGGTCAAGTGGAGACTGCCTCGATTCCAGCAGCAAAGAAGGCGGATCTAAAGGCCAAAATCTCCAACCTTCAGAATCAAGTAATAAAGGCAAAAAAGAAGACTGCTGAAGAGAACATACGAAAAGCTGTTGAAGCAGCTACCAAGGCAGCGGAAGTTGCACTTTCTGAGGGGAAAGCTTTCTGCATTTCGCATGTTGGCGTAGGGTCAGATACTGCTGCTATCCGTGAAGCGGTTGTTAAAGTTATGGAACAAAAGGGAATGGCAGTGATGGTTTTTAGCACGGACGAACAATCGAAGAAGGCTTTAGTTTGTGCGGGTGTGCCGGAAAAGAGCGATAAAAGCAACCAATTGAAGGTTTTAGAGTGGCTGAAGGCGGCATTGAAGCCGCTAGAAGGCAAAGGTGGTGGCGGAAAAGGCGGTCTTGCTCAAGGACAGGGACCGGATATCAAGCACGTGGACGAGGCAATAGACGTTGCCAAGTCATTTGCGTCTCTCAAACTCGGCTGA 2976 43.58 MRVQFTRNLTLAFDFRKSALYSSSSASIHRLNQSRVTMGSQSAVEVEWPANRVRDSFIKFFEQRNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTVDPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTVVYKLPTDRIYATYFGGDEKLGLPADTEAKDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKLSNYDTDVFIPIFDAIQQATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSQPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFHGLVKVVVDVMGHVFPELKEREAHIRDIIAEEEASFGRTLLHGIEKFKKTAQDVKGKIFSGHDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNVAMNEARERSRNAQNKQAAVTIVMDADATSALHKRGVATTDDSFKFIWDKEHKSVIKAIYTGSEYVDRADAGDDVGIILESTSFYAEQGGQIFDTGRIGGKSGSFEVCNVQIYGGFVLHLGKISESAQFHVGDEVICQVNYERRREVAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRKIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRKVDELLADPENKEWTSISAELCGGTHISNTRDAKAFALLSEEGIAKGIRRVTAVTTKYAFDALDAATKLQEEVDMASKLEGSFLEQKVTFLNGQVETASIPAAKKADLKAKISNLQNQVIKAKKKTAEENIRKAVEAATKAAEVALSEGKAFCISHVGVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDKSNQLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFASLKLG 991
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02833 991 FunFam Alanine--tRNA ligase 878 986 - -
Cobi4g02833 991 Pfam tRNA synthetases class II (A) 53 625 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cobi4g02833 991 FunFam Alanine--tRNA ligase, cytoplasmic 623 798 - -
Cobi4g02833 991 CDD AlaRS-core 50 296 - -
Cobi4g02833 991 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 724 782 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cobi4g02833 991 FunFam Alanine--tRNA ligase 522 621 - -
Cobi4g02833 991 SUPERFAMILY Translation proteins 530 622 IPR009000 -
Cobi4g02833 991 PANTHER ALANYL-TRNA SYNTHETASE 45 987 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Cobi4g02833 991 Gene3D Bira Bifunctional Protein; Domain 2 49 297 IPR045864 -
Cobi4g02833 991 FunFam Alanine--tRNA ligase, cytoplasmic 47 297 - -
Cobi4g02833 991 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 48 796 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cobi4g02833 991 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 301 501 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Cobi4g02833 991 Gene3D - 623 798 - -
Cobi4g02833 991 SMART tRNA-SAD-4 724 783 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cobi4g02833 991 SUPERFAMILY ThrRS-AlaRS common domain 622 796 IPR018163 GO:0000166(InterPro)
Cobi4g02833 991 Coils Coil 479 499 - -
Cobi4g02833 991 Gene3D - 879 986 - -
Cobi4g02833 991 Pfam DHHA1 domain 839 985 IPR003156 GO:0003676(InterPro)
Cobi4g02833 991 Gene3D - 518 622 - -
Cobi4g02833 991 NCBIfam alanine--tRNA ligase 53 969 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cobi4g02833 991 SUPERFAMILY Class II aaRS and biotin synthetases 49 300 IPR045864 -
Cobi4g02833 991 PRINTS Alanyl-tRNA synthetase signature 254 265 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cobi4g02833 991 PRINTS Alanyl-tRNA synthetase signature 126 137 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cobi4g02833 991 PRINTS Alanyl-tRNA synthetase signature 281 294 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cobi4g02833 991 PRINTS Alanyl-tRNA synthetase signature 362 375 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cobi4g02833 991 PRINTS Alanyl-tRNA synthetase signature 338 354 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cobi4g02833 991 Coils Coil 836 868 - -
Cobi4g02833 991 Hamap Alanine--tRNA ligase [alaS]. 48 990 IPR023033 GO:0004813(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02833 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1796851 Cobi Cobi3g00581 Cobi-Chr3:6378290 Cobi4g02833 Cobi-Chr4:76081803
1801225 Cobi Cobi4g02833 Cobi-Chr4:76081803 Cobi5g01774 Cobi-Chr5:39752443