AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02843 ATGTCAATGGCTTCTTCCTCAACCTCCTCCACCTTCAAAACCCTAATCACAATCACCCTCATACTCCTCTCTTATAGTCCAAAAGTAGAAGCTTTTAAACCACTAATTCGACCCACCGATATCCTCCCACTTTTGCCCCGCCAAGTTTCTTGGCCGATCCTCAACTCGCTCCGTGGCGCTGCCGATCTCCTCCCGAGCTTCGTTGGCGCCGCGGCGGTTGCGAATAATTCGAATTTGCATTGGAAAGGGTCTTGTTTTTATGAGAATAGTGCTTGGTTGGAGTTGCATAATAAAAGTGGGACTGAATTTGGTGGGGGTACTCTTCATATTAAGGTAAGCAATGCGCACAGTTGGACATGTATGGATATTTATCTCTTCGCGACTCCATATCGTGTGACATGGGACTATTATTTTATTTCACGTGAGCATACACTCGAGTTCGATGAATGGAGTGGGAAAGCCGAGTATGAATATGTAAAACACACAGGAATTTCGATTTTCTTGATGGAAGCGGGAATGATAGGAACCCTAGAAGCATTATGGGAAGTGTTCCCGTTATTCACAAATACGGGTTGGGGTGAAAGCTCTAATATCGCGTTTCTCAAGAAACATATGGGAGCTACTTTTGAGGCCCGGCCCGAACCATGGGTAACGAACATTACCCAAGACGATATTCACTCAGGGGACTTTCTTGCAATATCAAAGATTCGTGGTAGATGGGGCGGGTTTGAAACCCTGGAAAAATGGGTATCCGGGGCTTACGCGGGTCATTCGGCTATTTGCTTGAGGGACCCGGAAGGTAAACTTTGGGTTGGTGAATCCGGACATGAAGATGAAGAGGGTGAAGATGTTATCGCTTTGTTGCCATGGGACGAGTGGTGGGATTTTGAGTTGACCCAAGATGATGCTAATCCACATATAGCTTTGCTTCCGTTGCACCCTGATCTACGGGCCAAATTTAATGAGACGGCTGCTTGGGAGTATGCACAAAGTATGATCGGGTTACCGTACGGTTATCATAATTTGATATTTAGTTGGATAGATACTATCAGTGATAATTATCCACCGCCTTTGGATGCTAATCTGGTTGCGTCTGTGATGACTGTGTGGGATCAAATGCAGCCTGCATACGCGGCTAATATGTGGAATGAAGCCTTGAATAAACGGCTTGGTACCCAGGGGCTTGCACTTGCTGATATTTTAGTGGAAGTTGAAAGACGCGGTTCATCTTTTGCTGAATTATTAACGATACCCGAACAAGATGATTGGGTATACGCGGATGGAAAGTCAACTTCTTGTGTTGCTTTTGTTCTTGAAATTTACAAAGAAGCAGGACTCTTTGGAGATCTTGCGGATCAAATTCAAGTTACTGAGTTTACAATAAAGGATGCTTACACACTTAACTTTTATGAAAACAATTCGAGCCGACTGCCAAAGTGGTGTAACGAAGATGACACGGTTGAGTTACCATTCTGTCAAATTAAAGGAAAATACCGGATGGAGTTACCTGGGTACAATACCATTGACCCGTACCCGCATATGACTGAAAGTTGTCCATCGCTGCCCCCGGATTATGAAAGACCTCAATACTGCTGA 1596 44.67 MSMASSSTSSTFKTLITITLILLSYSPKVEAFKPLIRPTDILPLLPRQVSWPILNSLRGAADLLPSFVGAAAVANNSNLHWKGSCFYENSAWLELHNKSGTEFGGGTLHIKVSNAHSWTCMDIYLFATPYRVTWDYYFISREHTLEFDEWSGKAEYEYVKHTGISIFLMEAGMIGTLEALWEVFPLFTNTGWGESSNIAFLKKHMGATFEARPEPWVTNITQDDIHSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAICLRDPEGKLWVGESGHEDEEGEDVIALLPWDEWWDFELTQDDANPHIALLPLHPDLRAKFNETAAWEYAQSMIGLPYGYHNLIFSWIDTISDNYPPPLDANLVASVMTVWDQMQPAYAANMWNEALNKRLGTQGLALADILVEVERRGSSFAELLTIPEQDDWVYADGKSTSCVAFVLEIYKEAGLFGDLADQIQVTEFTIKDAYTLNFYENNSSRLPKWCNEDDTVELPFCQIKGKYRMELPGYNTIDPYPHMTESCPSLPPDYERPQYC 531
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02843 531 PANTHER OS01G0793500 PROTEIN 6 531 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02843 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
378061 Cobi4g02843 Cobi6g01437
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1789196 Cobi Cobi12g02450 Cobi-Chr12:36746359 Cobi4g02843 Cobi-Chr4:76740484
1801234 Cobi Cobi4g02843 Cobi-Chr4:76740484 Cobi9g03131 Cobi-Chr9:74240354
1820887 Cobi Cobi3g02675 Cobi-Chr3:78994512 Cobi4g02843 Cobi-Chr4:76740484
1821443 Cobi Cobi4g01882 Cobi-Chr4:29374005 Cobi4g02843 Cobi-Chr4:76740484
1822320 Cobi Cobi5g02875 Cobi-Chr5:79610815 Cobi4g02843 Cobi-Chr4:76740484
1856565 Cobi Cobi4g02843 Cobi-Chr4:76740484 Cobi6g01437 Cobi-Chr6:11619658