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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02933 ATGGCCATTCTCCAGCACACACAAACCCTAACCCTCACACTACTCTTCACTCTCCTCCAATTCTCCGTTAACGTGAGAAGCGTACAAATAACTGAATCCTCAATCCACGAACTCCTCAAAAGCAAAGGCTTACCCGTCGGTTTATTTCCAAAAGAAGTTGAATCATTCACACTCTACAACACGGGTCTTCTGGAAGTGTTCTTACGAGGTCCATGTTTAACAAAGTTCGATACGATGGCGTTTTACGAGAGTACGATACGAGCTAATCTTACGTATGGAAGTCTTACTGGCGTTGAGGGTTTATCACAGGAGGAATTGTTTCTTTGGTTGCCTGTGAAGGATATTATTGTTAATGATCCGAAATCTGGACTCATTTTATTCGATATTGGACTCGCGCATAAGCAGCTTTCGTTGTCTTTGTTTGAAGATCCTCCTGATTGTAAATCTGAAGATGTGTTGAATTTGAAGAAGAAATCAAGGAAGGAAATAGGATTTGATGCTCAAATGTAG 510 40.98 MAILQHTQTLTLTLLFTLLQFSVNVRSVQITESSIHELLKSKGLPVGLFPKEVESFTLYNTGLLEVFLRGPCLTKFDTMAFYESTIRANLTYGSLTGVEGLSQEELFLWLPVKDIIVNDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEDVLNLKKKSRKEIGFDAQM 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02933 169 FunFam Uncharacterized protein At3g07460 22 151 - -
Cobi4g02933 169 PANTHER T31J12.3 PROTEIN-RELATED 26 148 IPR007493 -
Cobi4g02933 169 Pfam Protein of unknown function, DUF538 35 142 IPR007493 -
Cobi4g02933 169 Gene3D - 21 152 IPR036758 -
Cobi4g02933 169 SUPERFAMILY At5g01610-like 10 149 IPR036758 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02933 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
378064 Cobi4g02933 Cobi6g01425
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1801302 Cobi Cobi4g02933 Cobi-Chr4:77963940 Cobi9g02963 Cobi-Chr9:72935724
1856461 Cobi Cobi4g02933 Cobi-Chr4:77963940 Cobi6g01425 Cobi-Chr6:11538615