Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi4g02966 | ATGTCTATCTCCGACCAAAACCGTTCAGTTTCCAACGGAAAACACCGGCGGTTGTTTCCGTTTTGGCAATCTGGAACCGGTTCTTCGTCGCCGGCGTCAACGCAGAGTCAACCGAATACGACGCCGAGTAGCAGCGAAAACGGCGTCGTGTCGAACGGCCGGTCGTCGAACAAGCTGTCGTCGGTGGCGAAATCGCTTCTTCCGGCGAGGCGACGGCTCCGGCTTGATCCGGCGAACAATCTCTACTTTCCGTATGAGCCTGGTAAACAGGTGAGAAGCGCTGTTCGGATTAAGAACCATAGCAATTCTCATGTTGCTTTCAAGTTTCAAACGACTGCGCCTAAGAGCTGTTATATGCGACCTCCTGGTGGTGTTCTGGCTCCTGGTGAAAGCCTCATTGCTACAGTTTTCAAGTTTGTTGAGCTACCTGATAAGAACGAAAAGCAGTCGGATCAAAGGAGCAAGGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAATTGTTTGATGAGCAAAAGGATGAGGTAGTTGTTGAGAGGATTTTAAAAGTTATTTTCTTAAATGCGGATCGCTCTACCCCGGCATTGGAAAAACTTAAACATCAACTTGCTGAAGCTGAAGCAGAATTAGAACTAAGGAAAAAGCCTCCAGTGGATACCGGTCCTAAAGTTGTGGGACAAGGACTTGTTATTGATGAGTGGAAAGAACGAAGGGAGAAATACCTGGCTCGACAACAAGTGGAGGCTGTAGATTTGATGTGA | 783 | 47.89 | MSISDQNRSVSNGKHRRLFPFWQSGTGSSSPASTQSQPNTTPSSSENGVVSNGRSSNKLSSVAKSLLPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNHSNSHVAFKFQTTAPKSCYMRPPGGVLAPGESLIATVFKFVELPDKNEKQSDQRSKVKFKIMSLKVKEGTDFVPELFDEQKDEVVVERILKVIFLNADRSTPALEKLKHQLAEAEAELELRKKPPVDTGPKVVGQGLVIDEWKERREKYLARQQVEAVDLM | 260 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi4g02966 | 260 | MobiDBLite | consensus disorder prediction | 22 | 61 | - | - | |
| Cobi4g02966 | 260 | Pfam | MSP (Major sperm protein) domain | 73 | 180 | IPR000535 | - | |
| Cobi4g02966 | 260 | SUPERFAMILY | PapD-like | 62 | 201 | IPR008962 | - | |
| Cobi4g02966 | 260 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 72 | 194 | IPR000535 | - | |
| Cobi4g02966 | 260 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Cobi4g02966 | 260 | Gene3D | Immunoglobulins | 68 | 196 | IPR013783 | - | |
| Cobi4g02966 | 260 | PANTHER | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN | 72 | 250 | IPR016763 | GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi4g02966 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cobi | Cobi-Chr4:78659973 | Cobi5g02100 | Cobi-Chr5:60884082 | dispersed | |
| Cobi | Cobi-Chr4:1239349 | Cobi4g02966 | Cobi-Chr4:78659973 | wgd | |
| Cobi | Cobi-Chr4:78659973 | Cobi5g01013 | Cobi-Chr5:11347491 | wgd |