AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02966 ATGTCTATCTCCGACCAAAACCGTTCAGTTTCCAACGGAAAACACCGGCGGTTGTTTCCGTTTTGGCAATCTGGAACCGGTTCTTCGTCGCCGGCGTCAACGCAGAGTCAACCGAATACGACGCCGAGTAGCAGCGAAAACGGCGTCGTGTCGAACGGCCGGTCGTCGAACAAGCTGTCGTCGGTGGCGAAATCGCTTCTTCCGGCGAGGCGACGGCTCCGGCTTGATCCGGCGAACAATCTCTACTTTCCGTATGAGCCTGGTAAACAGGTGAGAAGCGCTGTTCGGATTAAGAACCATAGCAATTCTCATGTTGCTTTCAAGTTTCAAACGACTGCGCCTAAGAGCTGTTATATGCGACCTCCTGGTGGTGTTCTGGCTCCTGGTGAAAGCCTCATTGCTACAGTTTTCAAGTTTGTTGAGCTACCTGATAAGAACGAAAAGCAGTCGGATCAAAGGAGCAAGGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAATTGTTTGATGAGCAAAAGGATGAGGTAGTTGTTGAGAGGATTTTAAAAGTTATTTTCTTAAATGCGGATCGCTCTACCCCGGCATTGGAAAAACTTAAACATCAACTTGCTGAAGCTGAAGCAGAATTAGAACTAAGGAAAAAGCCTCCAGTGGATACCGGTCCTAAAGTTGTGGGACAAGGACTTGTTATTGATGAGTGGAAAGAACGAAGGGAGAAATACCTGGCTCGACAACAAGTGGAGGCTGTAGATTTGATGTGA 783 47.89 MSISDQNRSVSNGKHRRLFPFWQSGTGSSSPASTQSQPNTTPSSSENGVVSNGRSSNKLSSVAKSLLPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNHSNSHVAFKFQTTAPKSCYMRPPGGVLAPGESLIATVFKFVELPDKNEKQSDQRSKVKFKIMSLKVKEGTDFVPELFDEQKDEVVVERILKVIFLNADRSTPALEKLKHQLAEAEAELELRKKPPVDTGPKVVGQGLVIDEWKERREKYLARQQVEAVDLM 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02966 260 MobiDBLite consensus disorder prediction 22 61 - -
Cobi4g02966 260 Pfam MSP (Major sperm protein) domain 73 180 IPR000535 -
Cobi4g02966 260 SUPERFAMILY PapD-like 62 201 IPR008962 -
Cobi4g02966 260 ProSiteProfiles Major sperm protein (MSP) domain profile. 72 194 IPR000535 -
Cobi4g02966 260 MobiDBLite consensus disorder prediction 1 61 - -
Cobi4g02966 260 Gene3D Immunoglobulins 68 196 IPR013783 -
Cobi4g02966 260 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 72 250 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02966 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:78659973 Cobi5g02100 Cobi-Chr5:60884082 dispersed
Cobi Cobi-Chr4:1239349 Cobi4g02966 Cobi-Chr4:78659973 wgd
Cobi Cobi-Chr4:78659973 Cobi5g01013 Cobi-Chr5:11347491 wgd