AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02977 ATGACTCATAAACAGGAGACCTTGTTTGTATCTGGAGCTTTAGTAGCGATTACAGTCCTATTATCATTGAAATTGTTTAGAGATCATCTTTCTCATTGGAAGAAACCCAAAGAACAAAAGGCGATTCTAGTGATTATTTTAATGGCACCAATCTATGCTATTGATTCTTATGTCGGGTTGCTTGATATTCGTGGTAGCGAGACGTTTTTTGTGTTCTTGGATTCGATCAAAGAATGCTACGAGGGTTTGGTGATGGCAAAGTTTTTGGCTTTGTTGTACACTTATTTGAATATATCTATTAGCAAGAATATAGTCCCGGATGAGATTAAAGGAAGAGAGATTCACCATTCATTCCCAATGACTCTATTTCAACCTCATTCGGTCCGTTTGAACCATCAAAACCTAAAGCTCCTCAAGTATTGGACATGGCAATTTGTTGTTATCCGCCCTGTGTGTTCTGTTTTGATGATAGTTCTTCAACTGCTTGAGATATATCCCGATTGGCTGAGCTGGACATTCACTATGATCTTGAACGTATCGGTTTCCTTAGCATTATACGCGCTTGTGGTCTTCTATCATGTATTTGCTAAAGAATTGGCCCCACATAAGCCACTCGCTAAATTCTTATGTGTCAAAGGAATCGTCTTCTTCTGTTTTTGGCAGGGAGTTGTATTGAGTGGTCTTGTGGCAGTTGGGATAATCAGATCAGATCACTTCTGGCTTGACGTGACACATATTCAACAAGCGTTGCAAAACGCGTTGGTGATCGTGGAGATGGTGTTTTTTGCAATCTTCCAGATGTATGCATACACTGCTGCACCATACAAGGATCTTGATGTGAAAGTGAAAAAGATGGTTCTTGTTAGGTTCAACAACCTCAAATTCAACGGCGGCGGCGGCGGCGGTGGTGGTGGTGGCGGTGATGACGGTGGGACATCAAGGGTTTTGGGGAATCTTGCTTTGGCTATTGGGTTGACTTATCTTAGTTTGACTGGTCAACTGGGTTGGATTCTTGACACTATTGTTTCCATTTGGCTTTTTGTGGTCATTGTTCCTGTTGTGGGTTTGGGAGCTCTTATTTGGTGGGCTAATAAAGATATGGTTGAAATCAAATGTCGGAGTTGTGGAAATGAATTTGAAGTTTTTAAATCTATGTTAAATGATGAACCGCAGCTTTGCCCCTATTGTAATAAACCCTTTTCAGTGGTGGGTGATGCTATGAAAGCCTCCGAGGAATCTACAGCATTTGGTGAAACATTTAGCGATTTGTTTTCGCAACTAAAGAAAGGGAAGGCTTCATCTAAAGCGGTTATTGATGTTGAAGCCGAGGTTAAGGATGAGATGGTGCAAGGTGATGAGTTGGAAGGCACGGGAGAGCGAAGAACACCGCTCCCCCACCCCTTCCCCTCATGCTGAGATAGCATGGTCTTTGAGATAATCGATGATAAAAGTACAACTGTAACTGCTGGTAAGCTTGGATAA 1482 41.84 MTHKQETLFVSGALVAITVLLSLKLFRDHLSHWKKPKEQKAILVIILMAPIYAIDSYVGLLDIRGSETFFVFLDSIKECYEGLVMAKFLALLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLEIYPDWLSWTFTMILNVSVSLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGVVLSGLVAVGIIRSDHFWLDVTHIQQALQNALVIVEMVFFAIFQMYAYTAAPYKDLDVKVKKMVLVRFNNLKFNGGGGGGGGGGGDDGGTSRVLGNLALAIGLTYLSLTGQLGWILDTIVSIWLFVVIVPVVGLGALIWWANKDMVEIKCRSCGNEFEVFKSMLNDEPQLCPYCNKPFSVVGDAMKASEESTAFGETFSDLFSQLKKGKASSKAVIDVEAEVKDEMVQGDELEGTGERRTPLPHPFPSCXDSMVFEIIDDKSTTVTAGKLG 493
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02977 493 SMART Solute-trans-a-2 7 275 IPR005178 -
Cobi4g02977 493 Pfam Organic solute transporter Ostalpha 8 275 IPR005178 -
Cobi4g02977 493 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 7 279 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02977 K14360 organic solute transporter subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:61964192 Cobi4g02977 Cobi-Chr4:78714147 dispersed
Cobi Cobi-Chr4:78714147 Cobi7g00230 Cobi-Chr7:1881692 dispersed
Cobi Cobi-Chr4:78714147 Cobi3g02774 Cobi-Chr3:80008380 transposed