Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cobi4g02979	ATGGAGACTCCGGGTTCGGTATCGAAAAGGTTGTTAAGAAAGAAATCTGCTTCTAGAAGCTACGATGAGAATTTGATGGATGATTATTTAGAGAAACAGTTAGGCGGGTCGACGAGGAAGCGGTTTAGAACGAAAAAGGAGTTGGAGAAAGAAACCGAGAAGGAAGCGATGATAGCACTTTCGTTAGGGTTTCCGATTGACGCGTTGCTTGACGAAGAGATTAGGGCTAATGTTGTTAGTGAGTTAGATGGGAAGCAGCAGAATGATTATATTGTTGTTAGGAATCATATTCTTTCGCGGTGGAGAGCTAACGTCCACGGGTGGCTTTCGAAAGGGCAGATTAGGGAAACGGTGAGTAACGAGTATGAACAGTTGATACATTCGGCTTATGATTTTCTTCTGTTTAATGGGTATATTAATTTCGGGGTTTCGCCGCCGTTCAAGGCTCAGATGCCCGAAGAAGCGACCGAGGGGTCGGTTGTTATAATTGGTGCGGGCCTTGCGGGGTTGGCTGCGGCCCGCCAGTTGTTAGCTTTCGGTTTTAAGGTGGTTGTGTTAGAAGGTAGGAACCGACCCGGTGGGAGGGTTTATACACAAAAGATGGGGGAAAAGGGTAACTATGCTGCTGTGGATCTTGGCGGTAGTGTTATTACAGGTATTCATGCGAACCCGCTTGGTGTTTTGGCTCGCCAGCTGTCAATCCCGCTTCATAAAGTTAGAGATAAATGCCCGTTGTATGATCCAAAAGGTCAACCCGTCGGTGATGAAATTGATTCAAAGATAGAGTTTATTTTTAACCGACTTTTAGACAAAGTTACTGAATTTAGGCAAATTATGGGCAAATCAGCGGCTGACATATCATTAGGCTCGGTTCTTGAAAAACTTGGACAGTTGTACACTGTCACGAAAACTCGCGAGGAAAAACAGTTACTCGATTGGCATTTTGCGAATTTGGAATATGCGAACGCGGGTTGTCTTTCGAATCTTTCAGCTGCTTATTGGGACCAAGATGACCCGTATGAAATGGGCGGTGACCATTGTTTTCTTGCAGGGGGGAATTGGCGGTTAATCGAAGCGTTATGTGACGGGGTTCCGATTTTTTATGAAAAAACCGTGCAAACGGTTCGATACGGTAATGAAGGTGTTGAGGTTGTTTGTGGGGATCAAACGTATCAAGCGGATATGGTGTTGTGCACGGTTCCGCTTGGTGTGTTAAAGAAACGGGTTGTGAAGTTTGAACCTGAATTGCCGGAAAGGAAACTTAAAGCGATTGATAAGTTGGGATTTGGGTTGTTGAATAAGGTTGCGATGGTGTTCCCGAATGTGTTTTGGGGTGAAGATTTGGATACGTTTGGGTGTCTTAGTGAGAACAGCAATACACGGGGCGAGTTTTTCTTGTTTTATAGTTATCATACGGTTTCTGGTGGTTCGGTTCTCGTTGCATTGGTTGCTGGTGAAGCTGCAAGATCCTTTGAATCAACTCATCCGTCTACTTTACTGCATCGTGTTTTAAGCATCCTTCGAGGCATATACGGTCCAAAAGGTATTGATGTACCTGACCCCATCCAGTCCGTTTGTACAAAATGGGGAAATGATCCTCTGTCATACGGTTCATACTCTCATGTACGGGTGCACTCGTCTGGTAGTGATTATGACATACTCGCAGAAAACGTGGGAAACCGACTTTTCTTTGCTGGTGAAGCCACCAATCGCCAGCACCCTGCCACCATGCACGGTGCTTATCTAAGCGGTTTAAGAGAAGCTTCATGCATTTATAGAGTCACACGTGGCAGTACGAAACAAACTCATTTTAAGAAAAGTAACCGGAAAATCGTTGGCGTTTGTGATATTCTTGTAAACCTGTTTAAATATCCCGATTTAAATTTTGGGAGTTTTCATTTCGTGTTTGACCCGTCAAACGAAGACCCTAAGTCAGCTGGAATTCTGATGGTTACGATCGATAGTAGTTCAAAAGAGACGTGTAATGATAACGGGAAAGTCAACGATAGTCAACCGTTGAAGCTTTACACGGTTATATCACGTGTCCAGGCGAACGAGCTGGAATCGGTTGAAGGTGGTGAAAGTCGGATGGCGTACTTGTATAAAACCCTCGGGTTGAAGTTAATGGGGTTGGACCGTTTTGCCCTCGAAGCAAATTCTTTGATTTCTAGTATTGCTTCAAAACGAGGGAGGGTGAGAAACCGGCGTGTTTCGTACACATGA	2223	44.67	METPGSVSKRLLRKKSASRSYDENLMDDYLEKQLGGSTRKRFRTKKELEKETEKEAMIALSLGFPIDALLDEEIRANVVSELDGKQQNDYIVVRNHILSRWRANVHGWLSKGQIRETVSNEYEQLIHSAYDFLLFNGYINFGVSPPFKAQMPEEATEGSVVIIGAGLAGLAAARQLLAFGFKVVVLEGRNRPGGRVYTQKMGEKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYDPKGQPVGDEIDSKIEFIFNRLLDKVTEFRQIMGKSAADISLGSVLEKLGQLYTVTKTREEKQLLDWHFANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIEALCDGVPIFYEKTVQTVRYGNEGVEVVCGDQTYQADMVLCTVPLGVLKKRVVKFEPELPERKLKAIDKLGFGLLNKVAMVFPNVFWGEDLDTFGCLSENSNTRGEFFLFYSYHTVSGGSVLVALVAGEAARSFESTHPSTLLHRVLSILRGIYGPKGIDVPDPIQSVCTKWGNDPLSYGSYSHVRVHSSGSDYDILAENVGNRLFFAGEATNRQHPATMHGAYLSGLREASCIYRVTRGSTKQTHFKKSNRKIVGVCDILVNLFKYPDLNFGSFHFVFDPSNEDPKSAGILMVTIDSSSKETCNDNGKVNDSQPLKLYTVISRVQANELESVEGGESRMAYLYKTLGLKLMGLDRFALEANSLISSIASKRGRVRNRRVSYT	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cobi4g02979	740	Pfam	SWIRM domain	69	141	IPR007526	GO:0005515(InterPro)
	Cobi4g02979	740	FunFam	Lysine-specific histone demethylase 1A	54	154	-	-
	Cobi4g02979	740	SUPERFAMILY	FAD-linked reductases, C-terminal domain	428	540	-	-
	Cobi4g02979	740	ProSiteProfiles	SWIRM domain profile.	49	150	IPR007526	GO:0005515(InterPro)
	Cobi4g02979	740	SUPERFAMILY	FAD-NAD(P)-binding domain	156	593	IPR036188	-
	Cobi4g02979	740	Gene3D	-	242	547	-	-
	Cobi4g02979	740	PANTHER	FLAVIN MONOAMINE OXIDASE	87	592	IPR050281	GO:0016491(PANTHER)
	Cobi4g02979	740	SUPERFAMILY	Homeodomain-like	51	152	IPR009057	-
	Cobi4g02979	740	Gene3D	-	54	153	IPR036388	-
	Cobi4g02979	740	Pfam	Flavin containing amine oxidoreductase	167	591	IPR002937	GO:0016491(InterPro)
	Cobi4g02979	740	Gene3D	-	160	589	IPR036188	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cobi4g02979	K11450	[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cobi	Cobi-Chr2:1343706	Cobi4g02979	Cobi-Chr4:78734128	dispersed
	Cobi	Cobi-Chr4:78734128	Cobi6g02163	Cobi-Chr6:17523663	dispersed
	Cobi	Cobi-Chr4:78734128	Cobi3g03639	Cobi-Chr3:88815160	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Cobi	Amino_oxidase	1.2e-83	CL0063		TR	SWI/SNF-SWI3