AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g02987 ATGGGGCGAGTAGGAAGAGATTGGACTCAGATCTATGCGATATATGGAATGGAGGATTGGCACACGCCGATTTTTCTGTTGATTCACGCGATTCTGTTTTCGGCTTCTTCGATTGTGTTTTTGTTGTACTTTAACTGGATCTGTTACTCGTTCGAGTTCATTTTCCCGTCGGTATTCTCCGGAAACGTTGCGAGATTCACCGCAGGATTCACCGGCTCCGTGATGGCGCTCTCCGCGGTCTGCCTATTTTACGCGGCGGGCAACATGTTCTACTCCTCAGTTGCCTTACGCTGGGACATGGCCCAGCGTATGGTCAGCGCGGTCAACGACTGGTCCTCAGTCAAGACCGTGCTGGACGTAGGCTGCAGCCGCGGCATTCTCCTGAATGCCGTGGCCATGGAATTAAAAAAAGAAGGCAGTTCGGGTCGTGTTGTCGGGTTGGACCGCAAAAACACGACATTATCAACATTAAAAACCGCGGCAATGGAAGGCGTGCAGGAGTACGTCACGTGCCGTGAAGGCGACGCCCGACGCCTTCCATTCCCAGACAACTACTTTGACGTAGTTGTCTCGGGCGGGTTCGTGCACAAAGTTGGGAAGGAATTCGGGGCGAAAACCGCTGCGGCTTCGGCCGAGCGGATGCGGGTGGTGGGGGAGGTGGTTAGGGTGTTGAAGGAGGGTGGTGTAGGGGTGGTGTGGGACCTAGTTCATGTACCCGAATATGTACTCCGGTTACAAGAGTTAAAGATGGAGGATATTAGAGTGTCGGAAAGAGTAACGGCGTTTATGGTCAACAGTCATATTGTCTCATTCCGTAAGCCCAGTCAGCACGTGATGGGCCCCACTGAAGTGAGATTGGATTGGAGATTCAACAATATCTTTTAG 885 52.32 MGRVGRDWTQIYAIYGMEDWHTPIFLLIHAILFSASSIVFLLYFNWICYSFEFIFPSVFSGNVARFTAGFTGSVMALSAVCLFYAAGNMFYSSVALRWDMAQRMVSAVNDWSSVKTVLDVGCSRGILLNAVAMELKKEGSSGRVVGLDRKNTTLSTLKTAAMEGVQEYVTCREGDARRLPFPDNYFDVVVSGGFVHKVGKEFGAKTAAASAERMRVVGEVVRVLKEGGVGVVWDLVHVPEYVLRLQELKMEDIRVSERVTAFMVNSHIVSFRKPSQHVMGPTEVRLDWRFNNIF 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g02987 294 PANTHER EXPRESSED PROTEIN 1 289 - -
Cobi4g02987 294 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 91 244 IPR029063 -
Cobi4g02987 294 Gene3D Vaccinia Virus protein VP39 84 273 IPR029063 -
Cobi4g02987 294 Pfam Methyltransferase domain 118 230 IPR013216 GO:0008757(InterPro)
Cobi4g02987 294 CDD AdoMet-MTases 116 236 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g02987 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
71925 Cobi3g02633 Cobi4g02987
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:78533604 Cobi4g02987 Cobi-Chr4:78789496 dispersed
Cobi Cobi-Chr2:90787384 Cobi4g02987 Cobi-Chr4:78789496 wgd
Cobi Cobi-Chr2:90361811 Cobi4g02987 Cobi-Chr4:78789496 wgd