AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03001 ATGGCATATCACTTGTTGGCACATGAAGTATCCGATCTTTGCCTCGGCAAGCCACCACTCACCTCCCTCCCTATCTCCGCCACCATCCACCACGCCTTAACCGCCCTTAAATCATCCGACGACACCCACATCAGCATCTGGACATGTGACCACTCTACCCCCGATAACTGCCGTTGCGTTGGCAAAATTTGCATGGTTGATATTATTTGCTACCTATGCAACCAAGACAACTTATCTTCACCTTCCAACGCGCTTAAAGCGCCTGTTTCGGTCTTGTTGTCGCGTCTTCCAGCCGCGGTTGTTCAACACGTCGAACCCTCGTACAGTTTGCTTGAAGCTATTGATCTTATCATCAATGGTGCCCAGAATCTCGTGGTGCCGATTAAGAATACAACTTCAAAAAGAAAACAACTCCGGCAACTACCGTCAATAGCTCCGACGACTCACGCCGGCGGCCGTGAATTCTGTTGGCTAACACAAGAAGATGTAATCAGATTCCTTCTCAGCTCAATCGGATTATTCTCTCCGACCGCCGCATATTCAATCGATTCACTCGGAATCATCACAACGAATATTCTCACAATCAATTACCACTCGCCGGCGTCGAAAGCACTCGACGCCATTTCAGCCTCTCTCGCCGACCAGACATCCGTCGCTGTCGTGGACGACGACGGAGTTTTGATCGGCGAAATCTCGCCGTTCACTTTGAACCATTGTGACGAGATGGTTGCGGCCGCAATCGCAACCTTATCCTCTGGTGACCTCCTGGCTTACATAGACTGTGGGGGGCCACCAGAGGATATTATAAGGATTGTGGAATCTAGGTTAAAAGAGAGGAATTTGTACGGATTGCTGGACGAGTTTTCTATTTACTCGTCTGGGATTCCGTACTGTAATTCCACATCTTCTTCTGACGAAGAAAATATGCTGTCACCAAGTACTGGTCGACCTGGACGGTACAATAGGTCAGACAGCTACTCCGCCAGGATAATGAGGAGGTCGGAAGCGATTGTCTGCCATCCTGGGAGCTCGTTGGTGGCGGTGATGATTCAAGCGATCGCGATGCGAGTGAATTGTGTTTGGGTGATTGAAGAGGATTGTAGTGTGGTTGGAGTAGTGAAATTTTCTAGCATGTTGAAAGTTTTTCAAGAACATTTGGAGAGCATGATTTACTAG 1176 48.55 MAYHLLAHEVSDLCLGKPPLTSLPISATIHHALTALKSSDDTHISIWTCDHSTPDNCRCVGKICMVDIICYLCNQDNLSSPSNALKAPVSVLLSRLPAAVVQHVEPSYSLLEAIDLIINGAQNLVVPIKNTTSKRKQLRQLPSIAPTTHAGGREFCWLTQEDVIRFLLSSIGLFSPTAAYSIDSLGIITTNILTINYHSPASKALDAISASLADQTSVAVVDDDGVLIGEISPFTLNHCDEMVAAAIATLSSGDLLAYIDCGGPPEDIIRIVESRLKERNLYGLLDEFSIYSSGIPYCNSTSSSDEENMLSPSTGRPGRYNRSDSYSARIMRRSEAIVCHPGSSLVAVMIQAIAMRVNCVWVIEEDCSVVGVVKFSSMLKVFQEHLESMIY 391
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03001 391 MobiDBLite consensus disorder prediction 302 321 - -
Cobi4g03001 391 SUPERFAMILY CBS-domain pair 179 387 IPR046342 -
Cobi4g03001 391 SUPERFAMILY CBS-domain pair 4 168 IPR046342 -
Cobi4g03001 391 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 18 385 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cobi4g03001 391 Pfam CBS domain 187 232 IPR000644 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03001 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:78911661 Cobi8g02424 Cobi-Chr8:74079290 dispersed
Cobi Cobi-Chr2:90884149 Cobi4g03001 Cobi-Chr4:78911661 wgd
Cobi Cobi-Chr2:90261595 Cobi4g03001 Cobi-Chr4:78911661 wgd