AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03010 ATGACTGGAGTGTCATTGGATTTAAGAACACAGAGTTATGGATCACCACAACAGCCACAAAACGGTCCGTTGCAGGCTCAAAATGGATTCACTGCACGCAAGCCTTCAAGGATGTCACTCAATGGTTCGAGGGAGAAAGATATATTTCTTCCTTTTTTGCGTAGATATCTGAGTAGAAAGAAGATTGTAATGATGATTTTGGCTTCATTTGCTCTCATGGCTTTCTTATCAGGGTTCTTTACGGCCAGTAGAGAAGATGCATCAGAGAGCACAATCTTCAATCATTTTAGTGATTCTTATAATACCTCTTTACAGTTCTCCAGAACGTTTCATAGTGAGAAAGATGATAATTCTAATATACAAAGTGCTTTGTCTGTGTGTGAAGAAAACCCTCCTACCCGCCATACTTCCAGTTCATTACATTCCATAGGATCCGTCGCTTCTCATAGCAATTTTTGTCAGAATTTTGCCTTTCCACCCCCTCCTCCAGGTGATAGGAGACGACCTGGACCTAGACCGTGTCCTGTATGTTACCTTCCAGTGGAGGAAGCTATGGCTAGCATGCCGAGTGCCACATCAGCATCACCTGTTCTTCAACACTTAACTTATTTCCATGAGGAGACTTCTACTAAAACCGAACCACATGAAGGCTCAGATTTTGGTGGATATCCTTCCATAAAGCAAAGGAATGAATCTTTTGATATTAAAGAATCAATGACTGTACATTGCGGGTTTGTAAAAGGTTGCAGACCTGGTTACAAAACTGGATTTGATATTGATGTTTCTGATCTTGTGGAGTTGGAGCAATATAACGATATCATTGTTGCATCAGCCATATTTGGAAACTATGATGTAATTCAGCAGCCAACTAAGATCAGTGAAGCTGCAAGTAAAAACATACCATTTTATATGTTTATTGATGAAGAAACCGAAGAATATATGAGAAATTCTAGTGCTTTGGACTACAGAATGAAGGTTGGATTATGGAGAATTATTGTTGTGCATAATATTCCTTACTCTGATGCTAGACGAAATGGAAAGGTACCCAAGCTTTTACTACACAGACTCTTTCCAAATGTTCGGTATTCTATATGGATTGACGGGAAGCTGCAACTCGTTGTGGACCCATATCAACTTCTCGAAAGGTTTTTGTGGCGCCACAATGCAACATTTGCTATTTCAAAACATTATAGGCGGTTTGATGTGTTTGAAGAAGCCGAAGCTAATAAAGCTGCAGGGAAATACGATAACGCATCGATTGATAAACAAATTAATTTTTACAGAAGCGAGGGTTTAACGCCTTACTCTGAGGCTAAGCTTCCTATAATCAGTGATGTCCCGGAAGGTTGTGTCATCATAAGAGAACATATTCCAATAACGAATCTCTTCACGTGTTTGTGGTTCAATGAAGTTGACCGTTTCACTTCACGAGATCAGTTGAGTTTCTCTACTGTAAGAGACAAAATCATGGCTCGAGTCGACTGGAATATTAATATGTTTTTGGACTGTGAAAGAAGGAATTTCGTTATACAGGCATACCATAGAGATCTGCTAGAGCACATGCCGCCGCCACCACCTGTGGGTAAAATGGTAAAACGGGCACGCGTTAATGTTCCTGTTACTGTTCCTATACCTGTGAGGGGTAATACTTCAACTGCTAAAAGTTCGGTAAAGAAAAACCCTGTTAAACGGAAAGGAGAGAGGAGATCTCGTTCTAGAAGGCATGTGAAAAATCCCGGTAACAGGGACAATATGGTCATTTGA 1764 40.31 MTGVSLDLRTQSYGSPQQPQNGPLQAQNGFTARKPSRMSLNGSREKDIFLPFLRRYLSRKKIVMMILASFALMAFLSGFFTASREDASESTIFNHFSDSYNTSLQFSRTFHSEKDDNSNIQSALSVCEENPPTRHTSSSLHSIGSVASHSNFCQNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAMASMPSATSASPVLQHLTYFHEETSTKTEPHEGSDFGGYPSIKQRNESFDIKESMTVHCGFVKGCRPGYKTGFDIDVSDLVELEQYNDIIVASAIFGNYDVIQQPTKISEAASKNIPFYMFIDEETEEYMRNSSALDYRMKVGLWRIIVVHNIPYSDARRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRHNATFAISKHYRRFDVFEEAEANKAAGKYDNASIDKQINFYRSEGLTPYSEAKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIMARVDWNINMFLDCERRNFVIQAYHRDLLEHMPPPPPVGKMVKRARVNVPVTVPIPVRGNTSTAKSSVKKNPVKRKGERRSRSRRHVKNPGNRDNMVI 587
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03010 587 MobiDBLite consensus disorder prediction 543 587 - -
Cobi4g03010 587 MobiDBLite consensus disorder prediction 1 29 - -
Cobi4g03010 587 PANTHER ALKALINE CERAMIDASE-RELATED 36 551 IPR006852 -
Cobi4g03010 587 MobiDBLite consensus disorder prediction 558 576 - -
Cobi4g03010 587 Pfam TOD1-MUCI70, glycosyltransferase-like domain 201 514 IPR048354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03010 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:79034576 Cobi5g02133 Cobi-Chr5:61610704 dispersed
Cobi Cobi-Chr4:79034576 Cobi5g00947 Cobi-Chr5:10580373 wgd