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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03016 ATGGAATCCCAACCCGACCCATCTCCGGCCAACTCTCCCTCCAGCACCACCACCACCACCACCACCACCCCACCACTCACTCCCAAACACATTTCAAGATCCGACCCAAATCCATACCCAACCACCTTTGTCCAAGCCGACACCACTTCATTCAAACAAGTCGTCCAGATGCTTACCGGATCATCCAAACCCGACCCACTTCATTCCAAATCCATCCCACCCGTCAAAACCGGTCAACAGAAGAAACAAGGATTCAAACTCTACGAACGCCGCAACAGTTTAAAAAACGGACTTATGATCAACCCGTCCGTCCGAAATTACGGACATGGACACGGACATGACTCATCTCCACGTGTCCGTGAATTGTTGTCTCCCAGCATTCTTGATTTTCCGGCGTTGGTGTTAAGTCCGGTCACTCCCTTGGTTGAAAGTCCGTTTAATAAGTCGTCGTCATCGTCGGTTTCTAATTCGGAGGAGGAGCGCGTGATCGCGGAAAAAGGGTTTTATTTGCATCCGTCTCCGTCGCCACGGGCCGCGACGGAGCCGCAACTTTTACCGCTTTTTCCCGTCACGTCGCCGCGGGTGTGA 588 52.55 MESQPDPSPANSPSSTTTTTTTTPPLTPKHISRSDPNPYPTTFVQADTTSFKQVVQMLTGSSKPDPLHSKSIPPVKTGQQKKQGFKLYERRNSLKNGLMINPSVRNYGHGHGHDSSPRVRELLSPSILDFPALVLSPVTPLVESPFNKSSSSSVSNSEEERVIAEKGFYLHPSPSPRAATEPQLLPLFPVTSPRV 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03016 195 PANTHER VQ MOTIF-CONTAINING PROTEIN 11-LIKE 14 195 IPR039611 -
Cobi4g03016 195 MobiDBLite consensus disorder prediction 59 85 - -
Cobi4g03016 195 MobiDBLite consensus disorder prediction 1 46 - -
Cobi4g03016 195 Pfam VQ motif 38 64 IPR008889 -
Cobi4g03016 195 MobiDBLite consensus disorder prediction 99 118 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03016 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
71805 Cobi3g00986 Cobi4g03016
378076 Cobi4g03016 Cobi6g01402
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr1:74106564 Cobi4g03016 Cobi-Chr4:79095523 dispersed
Cobi Cobi-Chr2:6908865 Cobi4g03016 Cobi-Chr4:79095523 dispersed
Cobi Cobi-Chr4:79095523 Cobi8g02401 Cobi-Chr8:73891466 dispersed
Cobi Cobi-Chr3:12745718 Cobi4g03016 Cobi-Chr4:79095523 wgd
Cobi Cobi-Chr4:79095523 Cobi5g00940 Cobi-Chr5:10498484 wgd
Cobi Cobi-Chr4:79095523 Cobi6g01402 Cobi-Chr6:11381282 wgd