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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03017 ATGACGGCTAACGGAGTAAAGATGGCGTTAACATCTCAGGCATACTTGGACGGATCTCAGGTCAAGCAAACCAAATCACTCATCACCGACTTATGCCGTCTCTTTTACACCCTAGGTTGGGTCTCCGGCACCGGCGGAAGCATCACCGCCAAGGTCCACGATGACTCCGTTCCCAAATCCGATCAGCTCATCATCATGTCACCGTCCGGTGTGCAAAAGGAAAGAATGGTGGAAGAAGATATGTATGTGTTATCGTCGAGTGGCGATATTTTGTTTACTCCATTACCGAAGCCGTTCCCTCACAAGGCTCCAAAATGTTCAGATTGCGCCCCTCTTTTCATGAAGGCTTATCATATGCGGAATGCTGGTGCAGTAATTCACAGTCACGGAATGGAATCTTGTCTTGTGACAATGCTTGATCCTTTGGCAAAAGAGTTTAAGATCACTCATATGGAGATGATTAAAGGAATTCAAGGGCATGGTTATTATGATGAGCTAGTGGTTCCAATTATTGAAAACACTGCTCATGAAAGGGAGTTAACTGCGTCTCTTGCTGCAGCAATTGAAGCATACCCGAAAACAACTGCGGTACTTGTACGAAACCATGGTATTTATGTATGGGGTGATTCCTGGATTAGTGCCAAAACACAGTCTGAATGCTACCACTATCTCTTTGAAGCTGCAATCAAACTTCATCAATTAGGTCTTGACTGGTCAACTCCAAGTCATGGTCCAATTCAAAGATCCAAACCGGTTTTAGGTGACAGATCTCAGAAGCGTTGTATTGTCCTTGACATTGAAGGGACAACAACACCGATATCATTTGTGACAGATGTTCTTTTTCCCTATGCCAAGAACAATGTGCAAAAACATTTGGAAGAAACATATGATACTGATTTTACGCAAGAAGATATTAAGTTGTTGCGGTCTCAAGTAGAAGATGATTTACAACATGGGGTTGTGGGTGCTGTCCCAATTCCGTCTGGTGAGACGGGAAAACAGGCGGTGATAGCTGCTTTGGTTGCTAATGTTGAAGGAATGATCAAATCAGACCGAAAAATTACTTCATTAAAACAGTTGCAAGGTCACATATGGCGCACTGGATTTGAGAAAAATGAACTTAAAGGAATTGTGTTTGATGATGTACCTCGCGCTCTTGAAAAGTGGCATGCTTCTGGGATAAAGGTGTATATTTATTCAAGTGGTAGCAGATTAGCACAGAGGCTGTTATTTGGATATACAGATTACGGGGACTTAAGAAACTACTTAAGTGGATTTTTTGACACCACCGTCGGAAACAAGAAAGAAACAAAAAGTTACGTCGAAATATCAGAATCACTTGGAGTTCATAAGCCATCAGAAGTCTTGTTTGTGACTGATATTTATCAAGAAGCTGTTGCTGCAAAGGCAGCTGGTTTGGAGGTGGTGATATCGGTTAGGCCCGGAAACGGATCGCTTCCTGAGAATCACGGGTTCAAGACAATCAAGTCTTTTTCGGAGATTTGA 1506 42.7 MTANGVKMALTSQAYLDGSQVKQTKSLITDLCRLFYTLGWVSGTGGSITAKVHDDSVPKSDQLIIMSPSGVQKERMVEEDMYVLSSSGDILFTPLPKPFPHKAPKCSDCAPLFMKAYHMRNAGAVIHSHGMESCLVTMLDPLAKEFKITHMEMIKGIQGHGYYDELVVPIIENTAHERELTASLAAAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQSECYHYLFEAAIKLHQLGLDWSTPSHGPIQRSKPVLGDRSQKRCIVLDIEGTTTPISFVTDVLFPYAKNNVQKHLEETYDTDFTQEDIKLLRSQVEDDLQHGVVGAVPIPSGETGKQAVIAALVANVEGMIKSDRKITSLKQLQGHIWRTGFEKNELKGIVFDDVPRALEKWHASGIKVYIYSSGSRLAQRLLFGYTDYGDLRNYLSGFFDTTVGNKKETKSYVEISESLGVHKPSEVLFVTDIYQEAVAAKAAGLEVVISVRPGNGSLPENHGFKTIKSFSEI 501
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03017 501 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 369 501 - -
Cobi4g03017 501 SUPERFAMILY AraD-HMP-PK domain-like 22 242 IPR036409 -
Cobi4g03017 501 Pfam Class II Aldolase and Adducin N-terminal domain 28 228 IPR001303 -
Cobi4g03017 501 SFLD enolase-phosphatase 260 500 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cobi4g03017 501 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 13 237 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Cobi4g03017 501 Gene3D - 273 368 - -
Cobi4g03017 501 Pfam haloacid dehalogenase-like hydrolase 260 472 - -
Cobi4g03017 501 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 21 246 - -
Cobi4g03017 501 CDD HAD-EP 261 482 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cobi4g03017 501 Gene3D - 20 245 IPR036409 -
Cobi4g03017 501 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 273 369 - -
Cobi4g03017 501 Gene3D - 369 501 IPR023214 -
Cobi4g03017 501 NCBIfam methylthioribulose 1-phosphate dehydratase 28 234 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Cobi4g03017 501 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 260 500 - -
Cobi4g03017 501 SMART Aldolase-II-2 26 229 IPR001303 -
Cobi4g03017 501 SUPERFAMILY HAD-like 258 501 IPR036412 -
Cobi4g03017 501 NCBIfam acireductone synthase 260 500 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cobi4g03017 501 Hamap Enolase-phosphatase E1 [ENOPH1]. 260 501 IPR027511 GO:0019509(InterPro)
Cobi4g03017 501 PANTHER ENOLASE-PHOSPHATASE E1 257 501 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Cobi4g03017 501 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 13 501 IPR027505 -
Cobi4g03017 501 Hamap Enolase-phosphatase E1 [mtnC]. 258 501 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03017 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Cobi4g03017 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Cobi4g03017 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Event-related genes

Select Gene_1 Gene_2 Event_name
71807 Cobi3g00987 Cobi4g03017
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:12762942 Cobi4g03017 Cobi-Chr4:79098015 wgd