AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03029 ATGGCTGCTAATTCAGTTGAAGACACACATGTTCATATTTTCTCATCATCATCTGAGTTGCTTGAGAAGTTACATGAAAAGTGGAACTCAGTTAAGCAGGTGCCATATCCAGCAATGTATTCCAGTGTTTATGGTGGGATTATTCTCGACCCCGCGATGATGGTCATCCCGATCGATGATCATATGGTGCATCGAGGACATGGTGTGTTTGATACTGCCATTATCCTTGATGGATACCTCTACGAGCTCGATGGTCATCTCGACCGAATCTTATTATCAGCATCACGAGCCAAACTCTCGCCACCCTTCCCAAAATCAACTCTTCGATCGATCCTTATCCAGCTAACATCCGCATCAAAATGCACAAAAGGAACATTAAGATATTGGATAAGTGCAGGACCAGGAGACTTCTTACTTTCACCTTCCGGGTGTCCAACAACTGCATTCTACGCAGTCGTTATAGACGAAGAGTTCTCGCAATGTAAAGAAGGTGTAAAAGTAATAACCTCCACAGTCCCAATGAAAGTACCATTATTTGCAACAAGCAAGAATGTGAATTACCTCCCAAATGTTTTGTCAAAACTCGAAGCCGAAGAGAAAGGCGCATTTGCATCAATTTGGGTGGATGACGACGGGTATGTGGCCGAGGGCCCGAATGTGAATGTGGGTTTTGTGACGCGTGACAAGGAGCTTGTTTTGCCGTTTTTTGATAAGATTTTAAGCGGGTGTACTGCGAAACGGCTTCTTGAATTGGCGCCAAAGTTGGTTGAGAATGGGAGGTTAAAGAGTGTGACAGTTGGGAATATAACAGTTGAGGAAGCTAAAGAGGCTGCTGAAATGATGTATATTGGAAGTACACTTCCTGTGTTGCCTATTATTGAGTGGGATGAAAAGCCGATTGGCGACGGGAAAGTTGGGGAGTTGACAATGGCGTTATCGGACTTGGTTTGGGAAGATATGGTGGCTGGTCCGGAGACACACAGGATCAAGGTTCCTTATGCGTAA 1005 44.58 MAANSVEDTHVHIFSSSSELLEKLHEKWNSVKQVPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGYLYELDGHLDRILLSASRAKLSPPFPKSTLRSILIQLTSASKCTKGTLRYWISAGPGDFLLSPSGCPTTAFYAVVIDEEFSQCKEGVKVITSTVPMKVPLFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDDGYVAEGPNVNVGFVTRDKELVLPFFDKILSGCTAKRLLELAPKLVENGRLKSVTVGNITVEEAKEAAEMMYIGSTLPVLPIIEWDEKPIGDGKVGELTMALSDLVWEDMVAGPETHRIKVPYA 334
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03029 334 PANTHER AMINO-ACID AMINOTRANSFERASE 30 325 IPR050571 GO:0019752(PANTHER)
Cobi4g03029 334 Gene3D - 6 154 IPR043131 -
Cobi4g03029 334 CDD ADCL-like 60 316 IPR017824 GO:0008696(InterPro)|GO:0030170(InterPro)|GO:0046656(InterPro)
Cobi4g03029 334 FunFam D-amino-acid transaminase, chloroplastic 16 154 - -
Cobi4g03029 334 Gene3D - 155 324 IPR043132 -
Cobi4g03029 334 Pfam Amino-transferase class IV 68 295 IPR001544 GO:0003824(InterPro)
Cobi4g03029 334 FunFam D-alanine aminotransferase 156 323 - -
Cobi4g03029 334 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 44 321 IPR036038 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03029 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr2:20309140 Cobi4g03029 Cobi-Chr4:79202931 dispersed