AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03042 ATGGATTCAGGGGTGTTAGATGCGGATAAAATAAGCAAAGAGAAGAGCAAGTGGGGTGAAGGTAATAATAATAAAGTTTACACCCGACGGCCGAAAACAACCGCCGTTGCCGCCCCCGCCACCGACACCGTAAATAACGACCAAACCCTAGCTACTGTAGTAGAACCGGAACCATCCGATAATAATAATATTAATAATAATAATAATAATAATAACAACGATAATGATAATGATAATGATAATGTTAATGATCACTCGGTTGAAAAGCCGGTGGTTACGGTGGTGGATGGTCGGGTGAAGATTAATATAAAGGCTGCAAAGTTGAAGGGTGAAATTGTTGAGGTTAGAGAAACGATGAAAACCGAGCTAGAACGGGTCAGACAGTTAGCTCAACGGCTTGAAGATAAAGAAGCCGAGCTAACCATGTTTTCGACAGAAGTTGTTACGGATGGTTTGGGTTACAATGGTTCGCGGTATTCAGGTAACGATATGGTTGATAGAAGAGCTTTACTTAGAGTTAATTCGGAAATGGGTGCTAGTTACACGAATAGTGGGATAAGGCCATTTAGACAGTTAAGTGTATCGGTTATGAACAATAATAATAGTCATATTAATAATCATCATCATTATCATCATCATCATCGTCATGGAGTTGGTGAGTTTGCGGAGAAGGAGAAACGGACACCGAAGGCGAACCAGTATTATAGAAATTCAGATTTTCTTCTTGGGAAAGACCGGTTACCGCCTGAAACAAACAAGAGGCGTAAATCTAATAGTGGAAGGAAAGTTAAAGTATCAAATAACATGTTCAAGAATTGTAGCAATTTGTTGCAGAGGTTAATGAAGCATAAACACGGGTGGGTGTTTAACGAGCCGGTTAACGCGCAGCAGTTAGGGCTTCATGATTACCACGATATTATTAAGCATCCGATGGATTTGGGCACGATTAAGAGCCGACTTGCGCAGAACTTTTACAAGTCTGCAATGGAGTTTGCAGAGGATGTTCGGCTCACATTTCATAACGCGATGACGTATAATCCAAGAGGGCAAGATGTGCATGTGATGGCAGAGCAGTTGTCAGAAATATTTGAAGAACGGTGGGCGTTGATTGAAGCAGAAGCGAATCAAGATTTGAGACACGGGATGATTTATGATGCAAACACACCGACTCCCACTTCAAGAAAGGTTCCTCATTTTGCGCATGCGCCTGCGAGAATGTTGTACAGGTCAGAATCTTTGAACTTGCCTGTGTTGACGAGGCCAATGCCTGTGCCAGCTGTCAGGACACCTGTACCGAAGAAGCCGAAAGCTAGGGACCCGAATAAGAGGAACATGACTTATGAAGAGAAGCAGAAACTTAGTACAAATCTTCAAAGTTTACCTTCTGAAAAGCTTGATAGTATTGTGCAGATTATTAAAAAGAATACATCACTTTCCCAACATGACGATGAAATCGAAGTTGATATTGATAGTGTTGATAATGAAACACTTTGGGAACTCGATCGGTTTGTCACGAATTATAAGAAAAATTTAAGTAAGCATAAAAGGAAAGCTGCACTTGCTCAACAAGCGCGGGCTGAAGCTGGTGACGTTAATCAGGCCGTGAATCCGTCAACGTCCTTCCCGGAGGCCTTGAAAGAAAATAACACGAATGAAACGAATCGTGCGAGTACGCCTCCTAATGGCAGTAGCTCAAGCAGTTCTAGCAGTGATTCTGGATCTTCTTCAAGCGATTCAGATAGTGATAGTTCATCTGAAGATGGATCAGATGCAGGTCATTCGCCTAGAAGCTGA 1794 42.03 MDSGVLDADKISKEKSKWGEGNNNKVYTRRPKTTAVAAPATDTVNNDQTLATVVEPEPSDNNNINNNNNNNNNDNDNDNDNVNDHSVEKPVVTVVDGRVKINIKAAKLKGEIVEVRETMKTELERVRQLAQRLEDKEAELTMFSTEVVTDGLGYNGSRYSGNDMVDRRALLRVNSEMGASYTNSGIRPFRQLSVSVMNNNNSHINNHHHYHHHHRHGVGEFAEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRRKSNSGRKVKVSNNMFKNCSNLLQRLMKHKHGWVFNEPVNAQQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSAMEFAEDVRLTFHNAMTYNPRGQDVHVMAEQLSEIFEERWALIEAEANQDLRHGMIYDANTPTPTSRKVPHFAHAPARMLYRSESLNLPVLTRPMPVPAVRTPVPKKPKARDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTSLSQHDDEIEVDIDSVDNETLWELDRFVTNYKKNLSKHKRKAALAQQARAEAGDVNQAVNPSTSFPEALKENNTNETNRASTPPNGSSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS 597
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03042 597 MobiDBLite consensus disorder prediction 1 85 - -
Cobi4g03042 597 Gene3D - 438 517 IPR038336 -
Cobi4g03042 597 Pfam Bromodomain 273 357 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 ProSiteProfiles NET domain profile. 435 515 IPR027353 -
Cobi4g03042 597 Coils Coil 112 146 - -
Cobi4g03042 597 PRINTS Bromodomain signature 284 297 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 PRINTS Bromodomain signature 300 316 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 PRINTS Bromodomain signature 334 353 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 PRINTS Bromodomain signature 316 334 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 MobiDBLite consensus disorder prediction 522 597 - -
Cobi4g03042 597 Coils Coil 504 524 - -
Cobi4g03042 597 Pfam Bromodomain extra-terminal - transcription regulation 445 505 IPR027353 -
Cobi4g03042 597 ProSiteProfiles Bromodomain profile. 281 353 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 MobiDBLite consensus disorder prediction 242 263 - -
Cobi4g03042 597 Gene3D - 206 380 IPR036427 GO:0005515(InterPro)
Cobi4g03042 597 SMART bromo-6 262 372 IPR001487 GO:0005515(InterPro)
Cobi4g03042 597 MobiDBLite consensus disorder prediction 38 77 - -
Cobi4g03042 597 SUPERFAMILY Bromodomain 249 373 IPR036427 GO:0005515(InterPro)
Cobi4g03042 597 PANTHER OSJNBA0053K19.4 PROTEIN 23 589 - -
Cobi4g03042 597 MobiDBLite consensus disorder prediction 1 20 - -
Cobi4g03042 597 CDD Bromo-plant1 269 367 IPR037377 -
Cobi4g03042 597 MobiDBLite consensus disorder prediction 532 582 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03042 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
378080 Cobi4g03042 Cobi6g01387
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr3:23570509 Cobi4g03042 Cobi-Chr4:79465111 dispersed
Cobi Cobi-Chr3:60615145 Cobi4g03042 Cobi-Chr4:79465111 dispersed
Cobi Cobi-Chr4:79465111 Cobi8g02654 Cobi-Chr8:75890491 dispersed
Cobi Cobi-Chr5:73879126 Cobi4g03042 Cobi-Chr4:79465111 transposed
Cobi Cobi-Chr3:13266462 Cobi4g03042 Cobi-Chr4:79465111 wgd
Cobi Cobi-Chr4:79465111 Cobi6g01387 Cobi-Chr6:11256752 wgd