AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03043 ATGGCGACTCGTGTTCTCCTTCGCACTCTTATCTCCTCCGTAAACCAAACCCTAATCCCCCGTTCCTTCACCTCCTCCTCCCACTTCCTACGCTTCCGTCCTCTCGCCGCCGTCGCCGCCGCTAATTTCCGACACTCCTCCCTCGCAGCCGCGGCAAACGACCGTACGTTCTCAACACGGCCGACCACTTCTTCTCTGAACGATTCGAACCCTAACTGGTCTAATAGGCCTCCGAAGGAGACGATTCTTCTCGACGGGTGTGATTTTGAGCACTGGCTTGTGGTGGTTGAGAAGCCGGAAGGCGAGCCGACAAGAGATGAGATTATTGAGTCGTATATTAATACTTTAGCTAAAGTTGTTGGCAGTTATGATGAAGCAAGGATGAAAATCTACTCGGTGTCAACGAGATGTTATTATGCTTTTGGAGCCCTAGTTTCTGAAGAGCTTTCTTACAAGCTTAAAGAATTACCTGGAGTTCGTTGGGTGCTACCTGATTCTTACTTGGATGTTAAGAACAAGGATTATGGAGGTGAACCTTTTATTGATGGAAAGGCTGTTCCTTACGATCCAAAGTACCATGAGGAGTGGATTAGAAATAATGCTCGGGCCAACGAGAGAAACCGGAGGAACGACAGACCTCGCAACTTTGACCGGTCAAGAAATTTTGAGAGAAGAAGAGAGAATATGCAAAACAACCGTGGTCCGCCTGGTCCACCGCCCAACAATATGAGCGGCCCACCACCGCCCAACAATATGAGCGGCCCACCACCACCCAACAACTGGAATGGGCCACCACCACCTAACAACATGAAAGGCCCACCACAGCCCAATAACTGGAATGGGCCATCACCATCCAATAACTGGAATGGGCCACCACCGCCAAACAACATGAGTGGCCCACCGCCACCCAATAACTGGAATGGGCCACCGCAGCCCAATAACTGGAATGGGCCACCACCACCCAACAACATGAGAGGTCCACCACCACCGCCCAATAACTACCAGCAGCAGGGGCGGTATGGGCCAGGACCAAGTGCAGGACAGGCTCAGGATGTAGGTGGAAGAGACATGCCCCCTCCTGCTGCAAACTATGAATGA 1098 51.64 MATRVLLRTLISSVNQTLIPRSFTSSSHFLRFRPLAAVAAANFRHSSLAAAANDRTFSTRPTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVVEKPEGEPTRDEIIESYINTLAKVVGSYDEARMKIYSVSTRCYYAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQNNRGPPGPPPNNMSGPPPPNNMSGPPPPNNWNGPPPPNNMKGPPQPNNWNGPSPSNNWNGPPPPNNMSGPPPPNNWNGPPQPNNWNGPPPPNNMRGPPPPPNNYQQQGRYGPGPSAGQAQDVGGRDMPPPAANYE 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03043 365 MobiDBLite consensus disorder prediction 204 230 - -
Cobi4g03043 365 Pfam Multiple organellar RNA editing factor 1, MORF domain 89 180 IPR054059 -
Cobi4g03043 365 MobiDBLite consensus disorder prediction 233 335 - -
Cobi4g03043 365 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 17 230 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Cobi4g03043 365 MobiDBLite consensus disorder prediction 204 365 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03043 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
69658 Cobi11g02478 Cobi4g03043
378081 Cobi4g03043 Cobi6g01386
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:79468882 Cobi6g01737 Cobi-Chr6:13940164 dispersed
Cobi Cobi-Chr12:16991353 Cobi4g03043 Cobi-Chr4:79468882 transposed
Cobi Cobi-Chr11:68612685 Cobi4g03043 Cobi-Chr4:79468882 wgd
Cobi Cobi-Chr4:79468882 Cobi6g01386 Cobi-Chr6:11253010 wgd