AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03052 ATGGCTAATCGGAATTTGGAGAAATTGGCTTCCATTGACGCTCAATTGAGGCTCTTGGTTCCGGGTAAAGTGTCTGAGGATGATAAGCTGATTGAGTATGACGCGTTGCTGTTGGATAAGTTTCTTGATATTTTGCAAGATTTGCATGGGGAGGATCTTAAGGAAACGGTTCAAGAATGCTATGAGCTTTCTGCTGAATACGAAGGAAAGCGGGACCCGAAGAAGCTTGAAGAGCTAGGAAGTGTGTTGACCAGTTTGGATCCCGGGGATTCGATTGTCATTGCAAAAGCTTTCTCGCACATGCTTAACTTAGCCAATCTGGCTGAAGAGGTTCAGATTGCTTACCGTAGAAGAATCAAACTGAAAAAGGGTGATTTTGCTGATGAGGCTAATGCAACAACTGAGTCAGATATTGAAGAGACTCTTAAGAAACTTGTGTATAAGCTTAACAAGTCCCCTGAAGAGGTTTTCGATGCACTCAAGAATCAAACCGTTGACTTGGTGTTGACTGCTCATCCGACTCAATCAGTCCGTAGATCTCTACTTCAGAAGCATGGAAGGATCCGTAACTGTCTGGCTCAGTTATACGCTAAAGACATCACTCCCGATGACAAACAGGAGCTTGATGAGGCCTTACATCGTGAAATTCAAGCTGCTTTCCGTACCGATGAGATCAGAAGGACTCAACCGACCCCACAAGATGAGATGAGGGCGGGAATGAGTTACTTTCATGAAACAATATGGAAGGGTGTTCCTAAATTCTTAAGGCGTGTTGACACTGCTTTGAAGAATATTGGGATTAATGAACGTGTTCCGTATAATGCGCCTCTTATTCAGTTTTCTTCATGGATGGGTGGTGATCGTGATGGCAATCCAAGGGTAACACCTGAGGTAACAAGGGATGTTTGCTTACTAGCAAGAATGATGGCTGCAAACATGTACTTTTCTCAGATTGAGGATTTGATGTTTGAGATGTCCATGTGGCGTTGTACTGATGAACTTCGTGTTCGAGCAGAAGAACTTTTTAGATCAGCTAGAAGAGATGTGAAACACTACATAGAGTTCTGGAAACAGGTTCCTCCAACTGAACCTTACCGTGTAATTCTTGGTGATGTAAGGGATAAGTTATATAACACACGTGAACGTGCCCGCCATTTACTAGCCCATGATATATCCGACATTCCAGAAGAGGCAGTTTACACCAATGTTGAACAGTTCTTGGAACCTCTAGAGCTATGCTACAGATCACTATGCGCGTGCGGTGACCGTGTGATTGCTGATGGAAGCCTTCTAGATTTTCTAAGGCAGGTGTCAACATTTGGACTATCATTAGTCAAACTTGATATAAGACAAGAATCTGACCGCCACACGGACGTCCTCGATGCCATCACTCAGCATCTGGAAATCGGGTCTTACCGTGAATGGTCCGAAGAAAAACGCCAAGAATGGCTTCTTGCTGAACTCAGTGGAAAACGTCCTCTTTTCGGCTCTGATCTTCCAAAAACTGAGGAAATTAAGGATGTTCTGGACACATTTAGTGTGTTAGCTGAACTCCCAGCTGACTGTTTCGGTGCTTACATCATCTCTATGGCCACATCACCATCTGATGTCCTCGCCGTGGAGCTTCTTCAACGCGAATGCCACGTAAAAAAACCGTTACGTGTGGTCCCACTTTTTGAAAAGCTTGCTGATCTGGAGGCAGCCCCGGCCGCCATGGCCCGCCTGTTCTCAGTCGACTGGTACAAGAACCGGATTAACGGGAAACAAGAAGTCATGATTGGGTATTCTGATTCAGGAAAAGACGCAGGTCGGTTTTCAGCTGCATGGCAGCTTTACAAAGCTCAAGAAGAGCTTAAAAACGTTGCCAAGGAGTTTGGTGTTAAACTTGTTATGTTTCATGGGCGTGGTGGGACCGTTGGTCGAGGTGGTGGACCCACCCATTTGGCTATCTTGTCTCAACCAGCTGAGACCATTCAAGGGTCGTTAAGAGTTACGGTTCAGGGTGAGGTTATTGAGCAGTCTTTTGGTGAGGAACATTTGTGTTTTAGAACACTGCAAAGGTTTTGTGCAGCTACACTTGAGCACGGGATGAACCCACCAATCTCTCCAAGGCCTGAGTGGCGTGAACTTATGGACCAGATGGCAGTTGTTGCAACCGAACAGTATCGGTCTATTGTCTTCAAGGAACCACGTTTTGTCGAGTATTTCCGCCTTGCCACACCGGAACTGGAGTACGGACGTATGAATATTGGAAGCCGACCATCAAAAAGAAAACCGAGTGGCGGAATTGAATCACTTCGGGCCATTCCATGGATCTTTGCATGGACCCAAACCCGGTTCCATCTCCCAGTTTGGCTTGGGTTCGGGGCTGCATTCAAACAAGCCATTCAAAAAGACAGCAAAAATCTTCAAATGCTTCAAGAAATGTACAAAACGTGGCCATTCTTTCGTGTCACCATTGATTTAGTTGAAATGGTGTTTGCTAAAGGTGACCCGGGCATTGCTGCCCTGAATGACAAGCTCCTTGTTTCTGAAGATTTATGGTCCTTTGGAGAATCGTTAAGAGCAAACTATGAAGAAACCAAAGATTATCTCCTCAAGATTGCTGGACACAAGGACCTTCTCGAGGGCGATCCCTACTTGAAACAAAGACTCAAGTTGCGTGATTCATACATCACCACCTTAAACGTTTGCCAAGCATACACCCTTAAGCGAACCCGTGACCCGAACTATCACGTGACCTTAAGGCCTCATATCTCCAAAGAATATGCCGAGCCAAGCAAACCGGCTGATGAACTCATCCACTTGAACCCGACTAGTGAGTATGCGCCTGGTTTGGAGGACACACTCATTTTGACCATGAAGGGTATTGCTGCAGGAATGCAAAACACCGGTTAG 2898 45.58 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKETVQECYELSAEYEGKRDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETLKKLVYKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEELFRSARRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERARHLLAHDISDIPEEAVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELSGKRPLFGSDLPKTEEIKDVLDTFSVLAELPADCFGAYIISMATSPSDVLAVELLQRECHVKKPLRVVPLFEKLADLEAAPAAMARLFSVDWYKNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELKNVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPAETIQGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEQYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKQAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLKLRDSYITTLNVCQAYTLKRTRDPNYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 965
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03052 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 Pfam Phosphoenolpyruvate carboxylase 34 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Cobi4g03052 965 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Cobi4g03052 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Cobi4g03052 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Cobi4g03052 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cobi4g03052 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03052 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
69668 Cobi11g02482 Cobi4g03052
70166 Cobi12g02280 Cobi4g03052
378085 Cobi4g03052 Cobi6g01380
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr12:28315292 Cobi4g03052 Cobi-Chr4:79624832 dispersed
Cobi Cobi-Chr4:79624832 Cobi5g02712 Cobi-Chr5:76917744 dispersed
Cobi Cobi-Chr11:68647771 Cobi4g03052 Cobi-Chr4:79624832 wgd
Cobi Cobi-Chr3:13357097 Cobi4g03052 Cobi-Chr4:79624832 wgd
Cobi Cobi-Chr4:79624832 Cobi6g01380 Cobi-Chr6:11194914 wgd