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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03058 ATGGGCACCGTTCGATCCGAATCCCTCATGCGTTGGGTTTGGGAAGCCAACCGTGGGAACCCGGTTCGCGAAAATGCCACCCTCACATTCGGTCCAGATGGAAACCTAGTCTTGGCAGATGCCGATGGACGTGTTGCATGGCAAACGAATACCGCCAACAAAGGTGTGGTTGGTTTCCAAGTGCTTCCAACCGGTAACATGGTTCTTCACGACGGTAAGGGTAATTTCATATGGCAAAGCTTTGATTCGCCAACCGATACTCTCTTGGTCGGTCAAACACTCATAGCTGGTGGTCCGAATAAGCTCGTGAGTCGCCTTTCCGAGGCGAGTAATGTAGAAGGACCGTATAGTTTGGTGATGGAGCCCAAAGGGTTATCCTTGTATTACAAAACTCCCAACTCGCCTAGACCAATGCTGTATTAG 423 50.35 MGTVRSESLMRWVWEANRGNPVRENATLTFGPDGNLVLADADGRVAWQTNTANKGVVGFQVLPTGNMVLHDGKGNFIWQSFDSPTDTLLVGQTLIAGGPNKLVSRLSEASNVEGPYSLVMEPKGLSLYYKTPNSPRPMLY 140
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03058 140 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 11 131 IPR051343 -
Cobi4g03058 140 CDD B-lectin 1 84 IPR001480 -
Cobi4g03058 140 Pfam D-mannose binding lectin 13 95 IPR001480 -
Cobi4g03058 140 Gene3D - 11 135 IPR036426 -
Cobi4g03058 140 ProSiteProfiles Bulb-type lectin domain profile. 1 82 IPR001480 -
Cobi4g03058 140 SMART blect-4 1 84 IPR001480 -
Cobi4g03058 140 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 133 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03058 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:79715802 Cobi4g03060 Cobi-Chr4:79723982 dispersed
Cobi Cobi-Chr4:79709631 Cobi4g03058 Cobi-Chr4:79715802 tandem