Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi4g03061 | ATGTCTACTTCTTCTTATAACTTTTGTTATGGTTTCATTCACTCAATTTTCCTCGTACTTTTGTTATGGTTTCAACTACTTATTTTCATTTCTGAAGCTCATGTGCCTGCTTCACAAACATTCACTTACGTTAACCAAGGCGATTTCGGCGAGTACGGCGTTGAGTACGGCGCTGATTATCGTTTCCTCCCCCCTTTCACTAACCCCTTCCAGCTTTGCTTCTACAACACAACCCCTAATGCATTTACTCTAGCTCTCCGCATGGGCACCGTTCGATCCGAATCCCTCATGCGTTGGGTTTGGGAGGCCAACCGTGGGAACCCGGTTCGCGAAAATGCCACCCTCACATTCGGTCCAGATGGAAACCTAGTCTTGGCAGATGCCGATGGACGTGTTGCATGGCAAACAAATACCGCCAACAAGGGTGTGGTCGGTTTTAAAGTGCTTCCAACCGGTAACATGGTTCTTCACGACCGTAAGGGTAGTTACTTATGGCAAAGCTTTGACTCGCCTACCGATACTCTCTTGGTCGGTCAAACACTCCGAGCTGGTGGTCCGAATAAGCTCGTGAGTCGCCTTTCCGAGACGAGTAATGTAGAAGGACCATATAGTTTGGTGATGGAGCCCAAAGGGCTATCCTTGTATTACAAAAGCCCTAACTCGCCCCGTCCAATGGTTTATTGGTCGTCTAGCGAGTGGTTCACCGTTGACAAGGGTAGTTTGGTCAATTTAACTCTTGTTTCAACAACAAAAACCGCCGAGGGTTACCTTTATTACTTAACGTTCGATTATTTTACCACAAAGTCATTTTCAAACAGCGTCATGGCATTTTCACGTCACAATACTACTTTATCGTATCTTCGATTAGGGATAGACGGAAACCTTAGATTCTACGCTTATAATTATCCTCACGAGTCGCAAGAGAGGACATGGAATTTGGTGTACACGTTTTTTGCTCGGGGTTCAAAGGAAGGCGAGTGTCAATTACCGGGACGATGTGGGAACTATGGGCTATGTGAGGACAGCCAGTGTGTGGCGTGCCCGACACCGGATGGGTTAAGTGGATGGAGCAAAGATTGCGAGGTGAAGAAGGTGACATCTTGCAATGAGAATGAGTTTCATTACTACACGCTTGAAGGCGTTGAGCATTTTATGATCAAGTACACGAGGGGAGACGCGGGGACTAGAAGTAACAATTGTGAAGAGAAATGCACGCGTGACTGCAAGTGTATGGGGTACTTCTATCACAAGGAGGGTTCGAGGTGTTGGATTGCTTATGATTTGAAAACGTTAACAAGAAATGGGAACTCTAATCATACGGCTCACATAAAAATGTCCACAAGGTAG | 1347 | 46.03 | MSTSSYNFCYGFIHSIFLVLLLWFQLLIFISEAHVPASQTFTYVNQGDFGEYGVEYGADYRFLPPFTNPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGPDGNLVLADADGRVAWQTNTANKGVVGFKVLPTGNMVLHDRKGSYLWQSFDSPTDTLLVGQTLRAGGPNKLVSRLSETSNVEGPYSLVMEPKGLSLYYKSPNSPRPMVYWSSSEWFTVDKGSLVNLTLVSTTKTAEGYLYYLTFDYFTTKSFSNSVMAFSRHNTTLSYLRLGIDGNLRFYAYNYPHESQERTWNLVYTFFARGSKEGECQLPGRCGNYGLCEDSQCVACPTPDGLSGWSKDCEVKKVTSCNENEFHYYTLEGVEHFMIKYTRGDAGTRSNNCEEKCTRDCKCMGYFYHKEGSRCWIAYDLKTLTRNGNSNHTAHIKMSTR | 448 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi4g03061 | 448 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 | 68 | 446 | IPR051343 | - | |
| Cobi4g03061 | 448 | CDD | B-lectin | 54 | 171 | IPR001480 | - | |
| Cobi4g03061 | 448 | PIRSF | SLG | 10 | 448 | IPR035446 | - | |
| Cobi4g03061 | 448 | ProSiteProfiles | PAN-Apple domain profile. | 368 | 446 | IPR003609 | - | |
| Cobi4g03061 | 448 | Pfam | S-locus glycoprotein domain | 264 | 352 | IPR000858 | GO:0048544(InterPro) | |
| Cobi4g03061 | 448 | SMART | blect-4 | 54 | 171 | IPR001480 | - | |
| Cobi4g03061 | 448 | Pfam | D-mannose binding lectin | 100 | 182 | IPR001480 | - | |
| Cobi4g03061 | 448 | Gene3D | - | 102 | 232 | IPR036426 | - | |
| Cobi4g03061 | 448 | ProSiteProfiles | Bulb-type lectin domain profile. | 38 | 169 | IPR001480 | - | |
| Cobi4g03061 | 448 | FunFam | Os04g0303100 protein | 90 | 224 | - | - | |
| Cobi4g03061 | 448 | Pfam | PAN-like domain | 387 | 424 | IPR003609 | - | |
| Cobi4g03061 | 448 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 79 | 229 | IPR036426 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi4g03061 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cobi | Cobi-Chr4:79736740 | Cobi4g03063 | Cobi-Chr4:79752960 | dispersed | |
| Cobi | Cobi-Chr4:79723982 | Cobi4g03061 | Cobi-Chr4:79736740 | tandem | |
| Cobi | Cobi-Chr4:79736740 | Cobi4g03062 | Cobi-Chr4:79740491 | tandem |