AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03061 ATGTCTACTTCTTCTTATAACTTTTGTTATGGTTTCATTCACTCAATTTTCCTCGTACTTTTGTTATGGTTTCAACTACTTATTTTCATTTCTGAAGCTCATGTGCCTGCTTCACAAACATTCACTTACGTTAACCAAGGCGATTTCGGCGAGTACGGCGTTGAGTACGGCGCTGATTATCGTTTCCTCCCCCCTTTCACTAACCCCTTCCAGCTTTGCTTCTACAACACAACCCCTAATGCATTTACTCTAGCTCTCCGCATGGGCACCGTTCGATCCGAATCCCTCATGCGTTGGGTTTGGGAGGCCAACCGTGGGAACCCGGTTCGCGAAAATGCCACCCTCACATTCGGTCCAGATGGAAACCTAGTCTTGGCAGATGCCGATGGACGTGTTGCATGGCAAACAAATACCGCCAACAAGGGTGTGGTCGGTTTTAAAGTGCTTCCAACCGGTAACATGGTTCTTCACGACCGTAAGGGTAGTTACTTATGGCAAAGCTTTGACTCGCCTACCGATACTCTCTTGGTCGGTCAAACACTCCGAGCTGGTGGTCCGAATAAGCTCGTGAGTCGCCTTTCCGAGACGAGTAATGTAGAAGGACCATATAGTTTGGTGATGGAGCCCAAAGGGCTATCCTTGTATTACAAAAGCCCTAACTCGCCCCGTCCAATGGTTTATTGGTCGTCTAGCGAGTGGTTCACCGTTGACAAGGGTAGTTTGGTCAATTTAACTCTTGTTTCAACAACAAAAACCGCCGAGGGTTACCTTTATTACTTAACGTTCGATTATTTTACCACAAAGTCATTTTCAAACAGCGTCATGGCATTTTCACGTCACAATACTACTTTATCGTATCTTCGATTAGGGATAGACGGAAACCTTAGATTCTACGCTTATAATTATCCTCACGAGTCGCAAGAGAGGACATGGAATTTGGTGTACACGTTTTTTGCTCGGGGTTCAAAGGAAGGCGAGTGTCAATTACCGGGACGATGTGGGAACTATGGGCTATGTGAGGACAGCCAGTGTGTGGCGTGCCCGACACCGGATGGGTTAAGTGGATGGAGCAAAGATTGCGAGGTGAAGAAGGTGACATCTTGCAATGAGAATGAGTTTCATTACTACACGCTTGAAGGCGTTGAGCATTTTATGATCAAGTACACGAGGGGAGACGCGGGGACTAGAAGTAACAATTGTGAAGAGAAATGCACGCGTGACTGCAAGTGTATGGGGTACTTCTATCACAAGGAGGGTTCGAGGTGTTGGATTGCTTATGATTTGAAAACGTTAACAAGAAATGGGAACTCTAATCATACGGCTCACATAAAAATGTCCACAAGGTAG 1347 46.03 MSTSSYNFCYGFIHSIFLVLLLWFQLLIFISEAHVPASQTFTYVNQGDFGEYGVEYGADYRFLPPFTNPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGPDGNLVLADADGRVAWQTNTANKGVVGFKVLPTGNMVLHDRKGSYLWQSFDSPTDTLLVGQTLRAGGPNKLVSRLSETSNVEGPYSLVMEPKGLSLYYKSPNSPRPMVYWSSSEWFTVDKGSLVNLTLVSTTKTAEGYLYYLTFDYFTTKSFSNSVMAFSRHNTTLSYLRLGIDGNLRFYAYNYPHESQERTWNLVYTFFARGSKEGECQLPGRCGNYGLCEDSQCVACPTPDGLSGWSKDCEVKKVTSCNENEFHYYTLEGVEHFMIKYTRGDAGTRSNNCEEKCTRDCKCMGYFYHKEGSRCWIAYDLKTLTRNGNSNHTAHIKMSTR 448
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03061 448 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 68 446 IPR051343 -
Cobi4g03061 448 CDD B-lectin 54 171 IPR001480 -
Cobi4g03061 448 PIRSF SLG 10 448 IPR035446 -
Cobi4g03061 448 ProSiteProfiles PAN-Apple domain profile. 368 446 IPR003609 -
Cobi4g03061 448 Pfam S-locus glycoprotein domain 264 352 IPR000858 GO:0048544(InterPro)
Cobi4g03061 448 SMART blect-4 54 171 IPR001480 -
Cobi4g03061 448 Pfam D-mannose binding lectin 100 182 IPR001480 -
Cobi4g03061 448 Gene3D - 102 232 IPR036426 -
Cobi4g03061 448 ProSiteProfiles Bulb-type lectin domain profile. 38 169 IPR001480 -
Cobi4g03061 448 FunFam Os04g0303100 protein 90 224 - -
Cobi4g03061 448 Pfam PAN-like domain 387 424 IPR003609 -
Cobi4g03061 448 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 229 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03061 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:79736740 Cobi4g03063 Cobi-Chr4:79752960 dispersed
Cobi Cobi-Chr4:79723982 Cobi4g03061 Cobi-Chr4:79736740 tandem
Cobi Cobi-Chr4:79736740 Cobi4g03062 Cobi-Chr4:79740491 tandem