AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi4g03065 | ATGGCTTCTCATTATCTCATTTATGTTATTCACATTCTATTTCTATACATTCACATACTATCCATCATCTCTAGAGCTGCTGTCCCTTCTTCAGAAACATTCACATATGTTAATTCGGGTGAATTCGGTATATATATAGTAGAGTATGACGCAACGTATCGCGCTCTCCCCCCTTATAGTAGTCCATTCCAGCTTTGTTTCTACAACACCACTCCTAACGCCTACACTCTAGCTCTACGCATGGGCACCATGCGGTCCGAATCACTTAGGCGTTGGGTGTGGGAAGCTAACCGTGGCAACCCTGTTCAAGAGAACGCGACTCTAACACTTGGAAAGGACGGGAACCTTGTCCTCGCGGACGCGGATGGTCGGATTGCTTGGCAAACGAATACCGCCAACAAGGGTGTGGTACGCTTTCAGGTGCTTCCGACCGGTAACATGGTTCTTCAAGATGCAAAAGGAAACTTCATATGGCAAAGTTTTGATTCTCCAACCGATACTCTCTTGGTAGGTCAATCTCTCCGAGCCAGCGGCATGAATACTGATCCGGGTTATCTTTATTACTTGTATTTTGATTACTTCAACACAAAACCCTTGTCACCCCAAGAACGTTACATGACCTACACAAAATATGATAACAGGCTATCGTTTCTTCGGTTAGAAATCGATGGAAACCTTAGATTCTACACGTATGATGATAACGTTGACAGTGGTGTCGCCTGGGAAACGGTCTACACGTTTCTTGATAGGGATTCAAGGGAAGGTGAGTGTCAATTACCCGAAAGATGTGGGAGATTTGGTTTGTGTGAGGATAACCAATGTGTCGCATGCCCGAGTGCGAATGGGCTAAATGGTTGGAGTAAAGACTGTGAGGCAAAGGAGGGGATATCTTGCAAAAGTAATGAGTTTCATTATTACAAGCTTCAAGGAGTCGACCATTTTATGATCAAGTACACGAAGGGAGACGGACCGATGAAACAAAGTGATTGTGAGAGCAAATGCACGAAGGATTGCAAGTGCATGGGGTATTTCTATCACACCGGTGAATTAAAGTGTTGGATTGGTTATGATTTGAAGACGTTAACACGAGATGGGAATTCGACTCATTTAGCGTACATCAAAACACCCAATAACTAA | 1137 | 43.98 | MASHYLIYVIHILFLYIHILSIISRAAVPSSETFTYVNSGEFGIYIVEYDATYRALPPYSSPFQLCFYNTTPNAYTLALRMGTMRSESLRRWVWEANRGNPVQENATLTLGKDGNLVLADADGRIAWQTNTANKGVVRFQVLPTGNMVLQDAKGNFIWQSFDSPTDTLLVGQSLRASGMNTDPGYLYYLYFDYFNTKPLSPQERYMTYTKYDNRLSFLRLEIDGNLRFYTYDDNVDSGVAWETVYTFLDRDSREGECQLPERCGRFGLCEDNQCVACPSANGLNGWSKDCEAKEGISCKSNEFHYYKLQGVDHFMIKYTKGDGPMKQSDCESKCTKDCKCMGYFYHTGELKCWIGYDLKTLTRDGNSTHLAYIKTPNN | 378 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi4g03065 | 378 | CDD | PAN-AP-plant | 296 | 376 | - | - | |
| Cobi4g03065 | 378 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 72 | 229 | IPR036426 | - | |
| Cobi4g03065 | 378 | Gene3D | - | 60 | 162 | IPR036426 | - | |
| Cobi4g03065 | 378 | ProSiteProfiles | Bulb-type lectin domain profile. | 44 | 162 | IPR001480 | - | |
| Cobi4g03065 | 378 | CDD | B-lectin | 47 | 164 | IPR001480 | - | |
| Cobi4g03065 | 378 | SMART | blect-4 | 47 | 164 | IPR001480 | - | |
| Cobi4g03065 | 378 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 | 52 | 376 | IPR051343 | - | |
| Cobi4g03065 | 378 | Pfam | S-locus glycoprotein domain | 198 | 283 | IPR000858 | GO:0048544(InterPro) | |
| Cobi4g03065 | 378 | Pfam | D-mannose binding lectin | 93 | 177 | IPR001480 | - | |
| Cobi4g03065 | 378 | PIRSF | SLG | 1 | 188 | IPR035446 | - | |
| Cobi4g03065 | 378 | PIRSF | SLG | 179 | 378 | IPR035446 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi4g03065 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cobi | Cobi-Chr4:79752960 | Cobi4g03065 | Cobi-Chr4:79780532 | dispersed | |
| Cobi | Cobi-Chr4:79780532 | Cobi4g03070 | Cobi-Chr4:79918251 | dispersed | |
| Cobi | Cobi-Chr4:79764889 | Cobi4g03065 | Cobi-Chr4:79780532 | tandem |