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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03074 ATGGACTTCCACCGGTTCTACGACACATGGTACGACCAACTCCACCACCAAATCCGCCACCTCTCCGACGCCCCACGGCCACCCACCACCGACGACCACCGCCAACAACTCACCCAACTCGTTAACAAAGTCATGTTCCATTTCGCCGAGTACTACCGAGTCAAGTCACTCGCGGCCAACCAAGACGTCCTCTCGATATTCTGCGCGCGGTGGTCGTCCACCCTCGAACGATCCTTGTACTGGATCGCGGGGTGGAGGCCCACCACCGCGTTTCATCTTATTTACACAGAGTCTAGCATATTGTTCGAGTCAAGGATGGTTGATATTCTTCATGGTCTCCGTACGGGTGACCTTGGTGACCTCTCACCCGCGCAGTTTACGCGCGTTAGCGAGCTTCAGTGTGAGACTGTTCAACAAGAGAACGCTATTACTGACCAGCTGTCGGAGTGGCAGGATGAGGCATGCGAGATATTGGGCGGAACATGTGTGGATCTAGACAAGAAGATCGGACGGCTAGTAAAGATAATGGAAAAAGCCGATGAACTGCGGCTTAGGACGCTAAAGGCGGTCGTGGAGCTGCTAACACCACAGCAGGCAGTTGAGTTTCTGATCGCAGCCGGAGAGTTGCATTTCGGGATACATAGGTGGGGTAAAAATCATGATCGTGACCGTGAACGCGTTGAAAAATGA 690 53.33 MDFHRFYDTWYDQLHHQIRHLSDAPRPPTTDDHRQQLTQLVNKVMFHFAEYYRVKSLAANQDVLSIFCARWSSTLERSLYWIAGWRPTTAFHLIYTESSILFESRMVDILHGLRTGDLGDLSPAQFTRVSELQCETVQQENAITDQLSEWQDEACEILGGTCVDLDKKIGRLVKIMEKADELRLRTLKAVVELLTPQQAVEFLIAAGELHFGIHRWGKNHDRDRERVEK 229
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03074 229 ProSiteProfiles DOG1 domain profile. 1 223 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cobi4g03074 229 Pfam Seed dormancy control 19 96 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cobi4g03074 229 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 2 226 IPR051886 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03074 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:79956012 Cobi7g00154 Cobi-Chr7:1271062 dispersed
Cobi Cobi-Chr4:79956012 Cobi2g01908 Cobi-Chr2:56955586 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi3g00493 ACH,WGDA 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.372 9.13e-141 403.0
Cobi3g00545 WGDA 49 276 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 44.8 1.39e-54 178.0
Cobi3g01015 ACH 1 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 46.828 2.25e-80 244.0
Cobi3g01288 ACH 21 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 48.611 7.16e-37 122.0
Cobi1g03034 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 52.174 9.40e-15 67.8
Cobi1g03553 WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 41.646 6.96e-74 231.0
Cobi1g03627 WGDA 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 43.805 2.09e-40 138.0
Cobi1g04460 . 47 112 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 63.636 2.03e-25 90.5
Cobi1g04556 ACH 6 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 49.065 2.01e-105 315.0
Cobi1g04749 ACH,WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 52.647 2.33e-98 292.0
Cobi1g04843 ACH,WGDA 51 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G15830 38.235 3.34e-17 73.2
Cobi1g05011 ACH,WGDA 32 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 57.664 2.18e-44 143.0
Cobi2g01908 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 76.737 0.0 503.0
Cobi2g01847 . 140 336 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 41.232 1.05e-25 104.0
Cobi11g00177 . 224 403 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 28.729 1.72e-17 77.8
Cobi11g00397 . 213 295 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 45.783 3.14e-16 75.9
Cobi11g00888 ACH,WGDA 120 213 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 44.681 2.59e-20 82.8
Cobi11g00946 ACH 11 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 46.732 4.09e-73 224.0
Cobi11g01437 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.924 3.34e-176 491.0
Cobi11g02207 WGDA 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 68.923 7.44e-147 421.0
Cobi11g02256 . 147 328 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 43.75 5.67e-28 111.0
Cobi6g02524 ACH,WGDA 54 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 69.307 3.50e-42 137.0
Cobi6g02418 ACH,WGDA 54 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G15830 43.956 3.65e-16 70.1
Cobi6g02351 ACH,WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 53.274 2.30e-100 297.0
Cobi6g02181 . 9 168 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 54.037 1.49e-44 142.0
Cobi6g01575 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 53.623 6.65e-16 71.2
Cobi6g01489 . 82 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 55.026 4.72e-58 182.0
Cobi6g01390 ACH,WGDA 57 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.918 8.54e-77 232.0
Cobi6g01343 . 20 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 48.07 1.85e-69 214.0
Cobi6g01308 . 32 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 68.771 1.02e-143 410.0
Cobi6g01291 . 27 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 44.631 3.16e-145 439.0
Cobi10g00263 WGDA 5 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 57.143 6.85e-52 160.0
Cobi10g00443 WGDA 1 353 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.958 1.99e-95 287.0
Cobi4g00552 . 126 323 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 23.529 8.91e-14 67.0
Cobi4g00646 WGDA 11 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 55.639 1.41e-50 157.0
Cobi4g00990 ACH,WGDA 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 55.975 2.75e-95 281.0
Cobi4g01223 . 215 278 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 66.667 3.31e-19 77.0
Cobi5g01254 . 1 246 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 57.993 1.54e-97 283.0
Cobi5g01378 . 1 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 57.194 3.99e-178 512.0
Cobi10g01676 ACH,WGDA 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 32.061 6.78e-26 103.0
Cobi2g01178 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 51.862 1.22e-102 303.0
Cobi12g02290 . 118 321 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 27.556 1.08e-14 70.9
Cobi12g01940 WGDA 13 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 45.552 5.28e-60 192.0
Cobi12g01896 ACH,WGDA 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.519 1.02e-144 414.0
Cobi12g01206 . 1 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 71.895 1.42e-58 178.0
Cobi12g00981 WGDA 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 58.071 0.0 549.0
Cobi12g00304 ACH 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 47.02 2.12e-33 115.0
Cobi6g00038 ACH 20 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 47.887 9.62e-70 214.0
Cobi6g00071 . 32 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 68.771 2.18e-143 410.0
Cobi6g00088 WGDA 27 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 45.241 2.00e-146 442.0
Cobi6g00360 . 55 199 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.135 1.47e-45 153.0
Cobi6g01240 . 16 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 48.667 3.33e-38 126.0
Cobi1g01631 . 121 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.068 8.34e-17 77.8
Cobi1g01563 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.831 2.42e-179 497.0
Cobi10g02853 . 37 139 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 36.538 1.02e-18 75.9
Cobi10g02852 . 38 124 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 40.23 4.15e-17 72.0
Cobi3g03167 ACH 15 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.649 4.77e-42 136.0
Cobi3g02779 WGDA 15 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 47.904 1.94e-78 241.0
Cobi3g02293 . 60 160 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 63.366 1.24e-36 124.0
Cobi3g01569 . 210 293 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 41.667 9.07e-12 58.9
Cobi5g00261 WGDA 21 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 54.777 1.42e-44 144.0
Cobih2tg0044l_1g00004 . 20 163 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 45.833 1.56e-33 114.0
Cobih2tg0044l_1g00063 . 1 431 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G19290 43.802 3.87e-93 286.0
Cobi9g03291 WGDA 49 147 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 45.631 6.90e-18 74.3
Cobi8g02501 ACH 6 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 54.878 1.45e-47 151.0
Cobi9g00214 WGDA 162 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 48.976 1.56e-137 421.0
Cobi2g03306 WGDA 11 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 63.6 0.0 592.0
Cobi2g03691 WGDA 26 338 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 49.686 5.00e-79 241.0
Cobi4g03319 ACH 22 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.826 2.91e-34 115.0
Cobi4g03375 . 1 431 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G19290 45.396 2.80e-97 296.0
Cobi7g02331 . 1 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 51.923 1.72e-40 137.0
Cobi7g01526 . 63 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 30.986 3.19e-13 66.6
Cobi7g01225 ACH 16 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 53.289 2.26e-89 266.0
Cobi7g01125 WGDA 30 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 57.437 7.28e-167 476.0
Cobi7g00942 . 193 299 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 31.818 3.28e-08 50.1
Cobi7g00433 ACH 213 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 50.562 7.46e-21 89.7
Cobi1g02668 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 52.956 2.10e-110 323.0
Cobi8g01999 ACH 42 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 58.631 1.29e-122 358.0
Cobi8g02072 . 298 386 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 43.333 4.78e-15 67.8
Cobi8g02239 ACH 66 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 52.809 3.42e-23 88.6
Cobi1g02153 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 53.528 7.38e-112 332.0
Cobi1g01971 WGDA 15 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 46.765 1.88e-73 246.0
Cobi1g01880 . 212 245 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 67.647 8.10e-08 45.8
Cobi1g01854 . 5 441 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 47.495 1.20e-102 311.0
Cobi1g01779 WGDA 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 48.869 1.02e-136 397.0
Cobi4g00236 ACH,WGDA 9 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 50.253 3.42e-104 310.0
Cobi10g01119 ACH,WGDA 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 53.968 4.17e-92 273.0
Cobi5g02697 ACH,WGDA 5 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 50.0 6.91e-41 135.0
Cobi5g02563 . 69 161 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 51.613 1.14e-19 79.3
Cobi5g02451 ACH 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 44.279 1.05e-85 262.0
Cobi5g01996 . 1 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 51.515 4.56e-91 272.0
Cobi7g00154 . 114 317 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 28.085 5.29e-19 83.2
Cobi1g01372 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 1.02e-22 95.9
Cobih2tg0340l_1g00001 . 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 32.061 3.38e-26 103.0
Cobih2tg0360l_1g00003 . 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.444 7.71e-24 99.0
Cobi4g00138 . 9 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.377 9.56e-103 307.0
Cobih2tg0439l_1g00006 . 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.515 4.89e-105 312.0
Cobih2tg0448l_1g00012 . 170 269 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G37730 47.0 4.76e-20 83.2
Cobih2tg0532l_1g00008 . 1 77 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 46.835 2.02e-14 73.2
Cobih2tg0579l_1g00002 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.831 2.42e-179 497.0
Cobih2tg0820l_1g00001 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 53.385 6.59e-111 325.0
Cobi9g00842 . 54 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 56.357 1.88e-97 292.0
Cobi9g00928 . 121 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.667 4.49e-17 78.2
Cobi9g01491 WGDA 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 63.863 2.41e-137 397.0
Cobi9g02432 ACH 25 349 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 55.917 7.64e-102 302.0
Cobi4g03074 . 112 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.676 1.35e-16 75.5
Cobi4g03030 ACH,WGDA 1 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.054 2.24e-98 291.0
Cobi4g02404 . 83 268 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 47.343 1.49e-38 133.0
Cobi4g02362 ACH,WGDA 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.444 7.71e-24 99.0
Cobi6g02698 WGDA 4 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 38.889 2.95e-58 190.0
Cobi6g02670 WGDA 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 40.625 2.39e-36 126.0
Cobi8g00027 . 155 287 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 47.794 8.45e-18 79.0
Cobi8g00757 . 1 299 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.856 1.77e-107 314.0
Cobi8g01275 . 11 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 59.322 4.93e-163 466.0
Cobi8g01533 . 1 241 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 55.0 6.42e-84 249.0
Cobi8g01554 . 58 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 47.059 5.11e-105 322.0