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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi4g03079 ATGGGTTGCGTTGGATCGTCACTTAATAAGCAAGACCGAACCGTGAAAAAGATAAGAAAGCCGAAGCCATGGGAGTTCCCACGGCCCGTTACATGGAGTCAGTTGGTTCAAATGCGCGATGAGTTTTGGGATTCAGCCCCTCACCATGGTGGCAAAAAAGAAATCTGGGATGCGATACATGCAGCAGCTGAAGCCGACTTAGAGCTCGCTCAAGCAGTTTTGGACAGTGCAGGGGTCATCGTTAAAAAACCTGATATGACCGTTTGTTATGACGAAACAGGTACCAAATATAAAATACCAAGATATGTGTTGAGTGAGCCAACAAACTTGATACAACTAAGTTGA 345 45.22 MGCVGSSLNKQDRTVKKIRKPKPWEFPRPVTWSQLVQMRDEFWDSAPHHGGKKEIWDAIHAAAEADLELAQAVLDSAGVIVKKPDMTVCYDETGTKYKIPRYVLSEPTNLIQLS 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi4g03079 114 MobiDBLite consensus disorder prediction 1 20 - -
Cobi4g03079 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
Cobi4g03079 114 Pfam Ubiquitin-binding domain 16 112 IPR032752 -
Cobi4g03079 114 Gene3D - 31 104 IPR038169 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi4g03079 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cobi Cobi-Chr4:80012382 Cobi5g00871 Cobi-Chr5:9440826 dispersed